Sample 3300012098

Overview

Basic Information
IMG/M Taxon OID	3300012098 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121619 \| Gp0175775 \| Ga0153966
Sample Name	Attine ant fungus gardens microbial communities from Florida, USA - TSFL050 MetaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	52586601
Sequencing Scaffolds	16
Novel Protein Genes	17
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Phanerochaetaceae → Phanerodontia → Phanerodontia chrysosporium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1
Not Available	5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
Type	Host-Associated
Taxonomy	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Fungus → Fungus corpus

Location Information
Location	USA: Florida, Paynes
Coordinates	Lat. (^o)	27.6228	Long. (^o)	-81.8037	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000950	Metagenome	822	Y
F002822	Metagenome	527	Y
F007675	Metagenome	346	Y
F015422	Metagenome	254	Y
F020486	Metagenome	223	Y
F026755	Metagenome	196	Y
F032889	Metagenome	178	Y
F041945	Metagenome / Metatranscriptome	159	Y
F042109	Metagenome	158	Y
F065291	Metagenome	127	Y
F079421	Metagenome	115	Y
F083491	Metagenome	112	Y
F086399	Metagenome	110	Y
F089631	Metagenome	108	Y

Family

Category

Number of Sequences

3D Structure?

F000950

Metagenome

822

F002822

Metagenome

527

F007675

Metagenome

346

F015422

Metagenome

254

F020486

Metagenome

223

F026755

Metagenome

196

F032889

Metagenome

178

F041945

Metagenome / Metatranscriptome

159

F042109

Metagenome

158

F065291

Metagenome

127

F079421

Metagenome

115

F083491

Metagenome

112

F086399

Metagenome

110

F089631

Metagenome

108

Scaffold	Taxonomy	Length	IMG/M Link
Ga0153966_100078	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	68321	Open in IMG/M
Ga0153966_100270	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae	26558	Open in IMG/M
Ga0153966_100488	All Organisms → cellular organisms → Eukaryota → Opisthokonta	14273	Open in IMG/M
Ga0153966_101315	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Phanerochaetaceae → Phanerodontia → Phanerodontia chrysosporium	4188	Open in IMG/M
Ga0153966_102602	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1700	Open in IMG/M
Ga0153966_102729	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	1622	Open in IMG/M
Ga0153966_103016	Not Available	1472	Open in IMG/M
Ga0153966_103312	Not Available	1358	Open in IMG/M
Ga0153966_106197	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae	882	Open in IMG/M
Ga0153966_106309	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites	873	Open in IMG/M
Ga0153966_106603	Not Available	850	Open in IMG/M
Ga0153966_106999	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	820	Open in IMG/M
Ga0153966_109601	Not Available	685	Open in IMG/M
Ga0153966_111668	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira	615	Open in IMG/M
Ga0153966_113876	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales	560	Open in IMG/M
Ga0153966_116678	Not Available	507	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0153966_100078

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales

68321

Open in IMG/M

Ga0153966_100270

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae

26558

Open in IMG/M

Ga0153966_100488

All Organisms → cellular organisms → Eukaryota → Opisthokonta

14273

Open in IMG/M

Ga0153966_101315

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Phanerochaetaceae → Phanerodontia → Phanerodontia chrysosporium

4188

Open in IMG/M

Ga0153966_102602

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes

1700

Open in IMG/M

Ga0153966_102729

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales

1622

Open in IMG/M

Ga0153966_103016

Not Available

1472

Open in IMG/M

Ga0153966_103312

Not Available

1358

Open in IMG/M

Ga0153966_106197

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae

882

Open in IMG/M

Ga0153966_106309

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites

873

Open in IMG/M

Ga0153966_106603

Not Available

850

Open in IMG/M

Ga0153966_106999

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens

820

Open in IMG/M

Ga0153966_109601

Not Available

685

Open in IMG/M

Ga0153966_111668

All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira

615

Open in IMG/M

Ga0153966_113876

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales

560

Open in IMG/M

Ga0153966_116678

Not Available

507

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0153966_100078	Ga0153966_10007843	F079421	LDYFGTRNYETNKGYSTEWIARKIRWSNEEKAIGILKVWTHSSREEECMKKKLKELNNMMDDEVLTALKALEELSILRKIGDKQLNV*
Ga0153966_100270	Ga0153966_1002707	F089631	MRPAIASTPSEEDVWKAPVIHRAALHYIFFSSVIFLTVGASLKNHS*
Ga0153966_100488	Ga0153966_10048814	F065291	MCGSGVAVDTQLLEANCPLDESIDSSTMETLRFRHSDSNCDTEADTSCGDRGATSLDEVIYEEAR*
Ga0153966_100964	Ga0153966_10096411	F065291	RLILNLLEANCPLDESIDSMTIESLMFHHSESNRDTEADISRGDRGTISLGEKIHEEAR*
Ga0153966_101315	Ga0153966_1013152	F042109	MISSCLSRQKTVGDFWPFGISSHGKKIWFMEVSANGHGILEKLSHKPWTPNMRRRKNKFVSQRPSIFTIMSVIYSSILESLIKFRPQCMLVCSGPVEFPLFTVCPCINNKLLEQLFTIKERWLRTISDV*
Ga0153966_102602	Ga0153966_1026021	F083491	SLFSSQVPENSKNPCKTGTMRMDYSCTEGRFISLKAWMTLCNNRSFRCTTIYHPPDTQVSRRPMSWSPEITGGLG*
Ga0153966_102729	Ga0153966_1027293	F000950	MKLLEEDSDDSESPPEVVKVNSTSIEEIPDPIPPSGKGKGTPKLDFPLEL*
Ga0153966_103016	Ga0153966_1030162	F002822	MEKTNTLSDGKNTLKETTYGNLKKTYKMQAKSCRSIFRVFQKQDNFSTELKPREGVMSQTSFSHNSTDTCTIPTV*
Ga0153966_103312	Ga0153966_1033121	F065291	VSRLILNLLEANCPLDESIDSMTIETLMFRHTESDRDTVADISQGDRGAISLGEEIHEEAR*
Ga0153966_106197	Ga0153966_1061971	F015422	MGYIMHWIIGMWYYGLEEDDLNGLARTVLHILLCIMFCCFQRERMGGIQEFQSVVLNLENEKRMQGKEMGRNALTHRWCLIYATMPIIFMLEMVLSHLSSMVESSFSSLWLMHGQIVSRGNSTGLEHINILLDLSSTRDYRMLLCMIGMMEKILGLWDANSFFPLLMWGVLDL*
Ga0153966_106309	Ga0153966_1063091	F086399	LLTALLILGVTQLQSGGLLCILGLPSVTTAGARDIQPMHVVLKALSARNVVDHTEWKTTDLWLGVARLIPSPTLLERLLQMVLHALTPSSV*
Ga0153966_106603	Ga0153966_1066031	F007675	NTQLIWNLSIEEMMGAQSRSYLHSVSKVSTFTHHNKLTSRIVSKLLMGLTTLNQALIRTPTPNLMGVIRSESMISQAFQACYSIEGCLSDCCILSQERVGYMVENIHQLNLSPRSPLTHSRESYLQPQELLR*
Ga0153966_106999	Ga0153966_1069993	F032889	MFVSEFPSLDEIEDEDPDNNILSWADTTDSGNHQQAMVVAAILNNRDQYGDSDCEDTKTWKAHVP
Ga0153966_109601	Ga0153966_1096011	F026755	RPWLQLMYYISVSGCEVGHVFQSDESRQDRGPKWTSGGVGEDKIRLGLIDINLQTAELHCNYSVLIGSPE*
Ga0153966_111668	Ga0153966_1116682	F041945	LDGEQMSPEEMLEKIRQQQGEIEYLKRQREILKKAMSILGEEPHSGMR*
Ga0153966_113876	Ga0153966_1138762	F000950	MKLLEEDSDNSESPPEVVNVNSASIEEIPDPVPPSGKGKGTPKLDFPLGL*
Ga0153966_116678	Ga0153966_1166781	F020486	MGHDDSKVYQLRVRITAEERNLLDALRIKRNRGETLSDLVREAISLLVKPHAANNENSLRPQVRDHVERLAELLQRQPRQVEESCIEGILDLIEHKCDVPLIVMETHLHLKYRGKDDKSEFP

Scaffold ID

Protein ID

Family

Sequence

Ga0153966_100078

Ga0153966_10007843

F079421

LDYFGTRNYETNKGYSTEWIARKIRWSNEEKAIGILKVWTHSSREEECMKKKLKELNNMMDDEVLTALKALEELSILRKIGDKQLNV*

Ga0153966_100270

Ga0153966_1002707

F089631

MRPAIASTPSEEDVWKAPVIHRAALHYIFFSSVIFLTVGASLKNHS*

Ga0153966_100488

Ga0153966_10048814

F065291

MCGSGVAVDTQLLEANCPLDESIDSSTMETLRFRHSDSNCDTEADTSCGDRGATSLDEVIYEEAR*

Ga0153966_100964

Ga0153966_10096411

F065291

RLILNLLEANCPLDESIDSMTIESLMFHHSESNRDTEADISRGDRGTISLGEKIHEEAR*

Ga0153966_101315

Ga0153966_1013152

F042109

MISSCLSRQKTVGDFWPFGISSHGKKIWFMEVSANGHGILEKLSHKPWTPNMRRRKNKFVSQRPSIFTIMSVIYSSILESLIKFRPQCMLVCSGPVEFPLFTVCPCINNKLLEQLFTIKERWLRTISDV*

Ga0153966_102602

Ga0153966_1026021

F083491

SLFSSQVPENSKNPCKTGTMRMDYSCTEGRFISLKAWMTLCNNRSFRCTTIYHPPDTQVSRRPMSWSPEITGGLG*

Ga0153966_102729

Ga0153966_1027293

F000950

MKLLEEDSDDSESPPEVVKVNSTSIEEIPDPIPPSGKGKGTPKLDFPLEL*

Ga0153966_103016

Ga0153966_1030162

F002822

MEKTNTLSDGKNTLKETTYGNLKKTYKMQAKSCRSIFRVFQKQDNFSTELKPREGVMSQTSFSHNSTDTCTIPTV*

Ga0153966_103312

Ga0153966_1033121

F065291

VSRLILNLLEANCPLDESIDSMTIETLMFRHTESDRDTVADISQGDRGAISLGEEIHEEAR*

Ga0153966_106197

Ga0153966_1061971

F015422

MGYIMHWIIGMWYYGLEEDDLNGLARTVLHILLCIMFCCFQRERMGGIQEFQSVVLNLENEKRMQGKEMGRNALTHRWCLIYATMPIIFMLEMVLSHLSSMVESSFSSLWLMHGQIVSRGNSTGLEHINILLDLSSTRDYRMLLCMIGMMEKILGLWDANSFFPLLMWGVLDL*

Ga0153966_106309

Ga0153966_1063091

F086399

LLTALLILGVTQLQSGGLLCILGLPSVTTAGARDIQPMHVVLKALSARNVVDHTEWKTTDLWLGVARLIPSPTLLERLLQMVLHALTPSSV*

Ga0153966_106603

Ga0153966_1066031

F007675

NTQLIWNLSIEEMMGAQSRSYLHSVSKVSTFTHHNKLTSRIVSKLLMGLTTLNQALIRTPTPNLMGVIRSESMISQAFQACYSIEGCLSDCCILSQERVGYMVENIHQLNLSPRSPLTHSRESYLQPQELLR*

Ga0153966_106999

Ga0153966_1069993

F032889

MFVSEFPSLDEIEDEDPDNNILSWADTTDSGNHQQAMVVAAILNNRDQYGDSDCEDTKTWKAHVP

Ga0153966_109601

Ga0153966_1096011

F026755

RPWLQLMYYISVSGCEVGHVFQSDESRQDRGPKWTSGGVGEDKIRLGLIDINLQTAELHCNYSVLIGSPE*

Ga0153966_111668

Ga0153966_1116682

F041945

LDGEQMSPEEMLEKIRQQQGEIEYLKRQREILKKAMSILGEEPHSGMR*

Ga0153966_113876

Ga0153966_1138762

F000950

MKLLEEDSDNSESPPEVVNVNSASIEEIPDPVPPSGKGKGTPKLDFPLGL*

Ga0153966_116678

Ga0153966_1166781

F020486

MGHDDSKVYQLRVRITAEERNLLDALRIKRNRGETLSDLVREAISLLVKPHAANNENSLRPQVRDHVERLAELLQRQPRQVEESCIEGILDLIEHKCDVPLIVMETHLHLKYRGKDDKSEFP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300012098: Attine ant fungus gardens microbial communities from Florida, USA - TSFL050 MetaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences