3300011968: Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-06

Overview

Basic Information

• IMG/M Taxon OID: 3300011968
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118444 | Gp0134401 | Ga0120681
• Sample Name: Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-06
• Sequencing Status: Permanent Draft
• Sequencing Center: Weill Cornell Medical College
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71041634
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium CG22_combo_CG10-13_8_21_14_all_63_91	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Canal → Unclassified → Unclassified → Aquatic Canal → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA:New York City
• Coordinates
  • Lat. (^o): 40.67
  • Long. (^o): -73.99
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037938	Metagenome / Metatranscriptome	167	Y
F041807	Metagenome / Metatranscriptome	159	N
F065254	Metagenome	128	Y
F092080	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120681_1003566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	709
Ga0120681_1005916	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium CG22_combo_CG10-13_8_21_14_all_63_91	632
Ga0120681_1006848	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	611
Ga0120681_1016130	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120681_1003566	Ga0120681_10035663	F041807	MARLELTLNFPKSFQIKTFNVKSEKKLSSLAKLILQSVQFKHFYYVRDDISYLLKSNPMERDFL
Ga0120681_1005916	Ga0120681_10059161	F092080	MCIYIPYKGGKGMQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMNKLIESLKWGEEDNQRGAAKKRVLNVLVKEKPLGNWEDIHRERTESDVDRS*
Ga0120681_1006848	Ga0120681_10068482	F065254	SNAPVALNKSSEQAEKVSVAAEALLWGCPITNFKATLPFNRMKQFFAAFKKRSHGPALARFKGYN*
Ga0120681_1016130	Ga0120681_10161302	F037938	NKVGDRLSELAGKDLETLVNLLNVEVNKRTSSKTEFEAKKCKKSKIDDKQRGLIRRFLNVNRWITEDFYDIRDKVLAD*