3300011967: Human oral microbial communities from Los Angeles, CA, USA - S03-01-D

Overview

Basic Information

• IMG/M Taxon OID: 3300011967
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134611 | Ga0119781
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S03-01-D
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 85611266
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F055792	Metagenome	138	N
F073671	Metagenome	120	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119781_101704	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5645
Ga0119781_103268	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3437
Ga0119781_103305	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3409
Ga0119781_116906	Not Available	825

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119781_101704	Ga0119781_1017044	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSLP*
Ga0119781_103268	Ga0119781_1032683	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEMTREIVDTLIEISGAAILVKEVKDGMYMPHHLWAEVPRLGKIQHVDGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0119781_103305	Ga0119781_1033053	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYPLETLQKEGYILFEGRMLPCEACGVDPRSSVKSLDLESRIIGEAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL*
Ga0119781_103305	Ga0119781_1033054	F040149	VADEGAKEFRWKVLIKEQGIPVLFVEVEAWYDGRVSSSEILSSFGIALEREPRLTPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETVVMQLLNIHRMF*
Ga0119781_116906	Ga0119781_1169063	F073671	MTNNKQAEHELAELHGKERSLEKALELVREKIRELINYTNKNKAAR*