3300011298: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 DCM_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011298
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0119794 | Ga0138362
• Sample Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 DCM_A metaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 51472400
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	6
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales → Saprolegniaceae → Saprolegnia → Saprolegnia parasitica	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000351	Metagenome / Metatranscriptome	1248	Y
F001051	Metatranscriptome	792	Y
F005343	Metatranscriptome	403	Y
F007527	Metagenome / Metatranscriptome	349	Y
F011083	Metagenome / Metatranscriptome	295	N
F018182	Metagenome / Metatranscriptome	236	N
F034477	Metagenome / Metatranscriptome	174	Y
F037503	Metagenome / Metatranscriptome	168	Y
F040127	Metagenome / Metatranscriptome	162	Y
F042917	Metagenome / Metatranscriptome	157	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138362_1005834	Not Available	581
Ga0138362_1009518	Not Available	822
Ga0138362_1017978	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	604
Ga0138362_1024257	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	561
Ga0138362_1024971	Not Available	613
Ga0138362_1046580	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	595
Ga0138362_1049278	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	661
Ga0138362_1053784	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	576
Ga0138362_1056593	All Organisms → cellular organisms → Eukaryota	764
Ga0138362_1061848	Not Available	648

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138362_1000599	Ga0138362_10005991	F034477	KKRDIEQMEAKIADLTATIDALTKAIAALQAEIAEMQVQLKRAGEDRELENKDFQNVVADQRETQRLLTNALNVLKGFYDKAFMQTKQHQPAGPPPPPGFKEYKQSAGAGGVMGMMEQIIRDTETLEAEAIKAETDAQKAYESYVKDTNKSIEEKTRSITEKTGEKA
Ga0138362_1005834	Ga0138362_10058341	F077350	TDIQALLEELEGKLRGALDVLSPSVKAMCENLQQAAVDIRKDKDATMLWGTLNDLQVFLSLVQQICTSVGSQGPKVVEFDNALGESLGTLETVVVDSEDAEDVAVFIEESLIRAFDKWPNAEAELREIAVV*
Ga0138362_1009518	Ga0138362_10095181	F083743	KLLAALMSRVEGLRNFIARIKLTRKRLRKHIIAVNALFKLKFDENMANVGAATQVLADIGHLKLAPYNPKLNKIKQFKSFSEDTTSLIQLTTKALKGKTNCADKDECSGATKLAFQAYRKGLELNKAMGVNFEKERKVLGGMRDAIRQLLDKKTAKLNKLLAQIERIKGAMADDDYDAAKKSLGEHLKILAKSCAGMGAFEKQLKQKTTKLLSAMDNKGELPAKAPEVKADATGTEQ*
Ga0138362_1017978	Ga0138362_10179782	F007527	MVTPEQRRIKVFNKGTSLALKVKIPLGGHILPISIVSEILAAKNAQKKAKKNITSEAINNNIP*
Ga0138362_1024257	Ga0138362_10242571	F042917	ITLLVLSASSATALQVPLRSVKPKTLRFVEVAERIQTSEEKPETFSAGDYLNTLDRFGGPDSTEPANNIIASPFDAEPNAFDAMIDAAAEEAKTMLEGAVTTTLEEIEQDRKDEAAQDAVAAVEKTISTKLDETMEKIETAAVPMEEIEVGPVGEFLIKWGFKDDPRIPEDERIPAMQRIKDSGKA
Ga0138362_1024971	Ga0138362_10249711	F005343	LSAIASPDEEVMGPNLKFSKVSTTMSCIISLTIQYMVIYTALGVCRTYLDFQGTSHDSSPLAKALKHASETVFYAPMVCMMFVGFRMRVLQLSKGTGDPQDWVRFSMQAVTYSILANTLLVLLVPLFTASEVELEKETGELKTEGKNPFENAMLATIFTVIRYLSFLGLYVGFGCVCTGVFLYEPPAGVWDGPIPPLSPAVQCT
Ga0138362_1039171	Ga0138362_10391711	F000351	MIFTVLLGLAAAVDMHQKVTPVQKVIQLLQGMAAKGKKEKHEEQVQFAAYKQFCDDTTVEKQRAIKEATAKMEQLVAAIQKAEADAATLAKEIAQLDEDISVYEGDKKAATEVREMENADYLTTHKDYSESVDALERAIATLKKQAYDRTQLLQVNQLQLIPEHAKKVISAFLSQGDEL
Ga0138362_1046580	Ga0138362_10465801	F101226	RRGATRLAATPTDVRVLDHHLGGIMLGLDRVGDFLEAIAALEPKKIKSDKFQYPKTMSDPDWDGSISINTYTDYSTLYGPFTVHTYHEEWDSGTDIYATDAETGKDLMTYIVQCMRASGRYRGSLFDNDGRGDSERLREMDEVEADYAGLGKLYRGNIARDHGDDTYDIVYYRYDDGGRVRETRVAERLIRKLGV*
Ga0138362_1049278	Ga0138362_10492781	F018182	MNPNNISMKDTRDGVVVKADGRTLLAKLVFAGSARLAECGLGIDELRAAFKKAHGEEASKGTLTYQLNEQDEDALQLLDDADLALAKKHGSEPLKITSTEVDSRNVFDHASAELAKHGLDAPATELKKLLDVLQFKPRRLVKCGLAPPKALKCTAKGDEAEEPEDVLVVEALSIEDKEADATLDDAALAAKLQAEEYG
Ga0138362_1053784	Ga0138362_10537841	F056636	AAWAPLENNQAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFDEIERLLGVVMSFVFLSLTAVPSAAMFFHKRVTKAKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRARNAGF*
Ga0138362_1056593	Ga0138362_10565931	F060086	PFELDSNLLLSVDQHGEDRKRQLNSFNDHETPLLDDLADLLY*
Ga0138362_1061848	Ga0138362_10618481	F077350	EVAVTDSALANQIQKTEADPNQTDIQALLEELENKLRGALDVLSPSVKAMCDNLHKAAVDIREEKDATMLWGTLNDLQVFLSLVQQICTSVGTQGPSVVEFDNALGESLGTLETVVVDSEDPEEVAVFIEESLIRAFDKWPSAEAELRKIADV*
Ga0138362_1062236	Ga0138362_10622361	F092109	SGAGMVIPMDSGATDQCLPIDISGTVYGGYIRECVGQSTSALTGTLQNMVYTNPGCQGLPVDSDSAGVGVCLFDYRRTNSTTPYIILTANATAINVMKCSDNACSLNCVSGDSILLKDLGSCTDGSQAGPLYTGLSFKSMYVPNAGSLTPVVNESPSVTAYLYKNVDECNVDKKAGRVSAQSLGAATGALDDCLGPWSSGGQFNSTK
Ga0138362_1066714	Ga0138362_10667141	F011083	DGIVASTSDIIAASRVEDALRALPNEVLEGVTVKARTSDTVSLCTRFHDGVQHLGGYSETTDGNFKNSKMSTNYCETTYTMATGSNKMDFTIEFADKPGQTGVQYLFEVDINKRGAGSFPVSGGITGTGAYSVAEMNFNVNLGNLSELAECSDRGLDDGDGQCECFDGFRGLACEEQEAL
Ga0138362_1073637	Ga0138362_10736371	F073591	MWTWRALLLSGAVGVSVANILTVIVAYDAVAFPHQMISDYVATKPGAAVANWAWPLFILSHALFEARLFHRIKQHKAKAPQAYKYWVYSLYGLVAGWLSMVLCLVFDIRSCPR
Ga0138362_1076509	Ga0138362_10765091	F090440	GNEISGLKLATDLRLKRIYHCRITDVGEGHDLRVIIHKNVGG*
Ga0138362_1078916	Ga0138362_10789161	F040127	AGLAANQGVFGASAKETNLTDTNTTGHIKKESGVFTDSYSSQFIELGIGQFVSIGYEHTPDSVTTPTHTPREDGNTNLSSGSKVSVDFNDLNTTYLRVNLPFAAGVYVKAGTVSTDLDIKESLAGGRSYKNVSTDGSVIGVGYHKFINDSRIGVRLEGSYLELDNVSTDNGVSKTGATVANGGRNQVDASNLEGLQAKVAITITLGKD*
Ga0138362_1084937	Ga0138362_10849371	F071278	DIEDSLDPLFHNGSFITLRQMITASIIIAQMDPTTTSERGAKTPYDLDNSGVKIKFANQSDAVIAPSATNRAISERSSLAKVYDLHLFVNLAGTTDIIAARNNGPYATGAPFFYIVMATDTETGRSDSLTDSLLTVNLTQFPTGILATNQGGPQAETSVILPQDFD*
Ga0138362_1085055	Ga0138362_10850551	F001051	MGNALATDSIPVLVTLVDVHNPKSQDTFYFANVSTGGAASKVVGRSQTLSAEVSISTILTLTVYECPEPMFTPEHARSLGILRVPVERLAERYSSGIFQQWFNLDTKADPKLPPGDMTTVVQNFEESYQNAVTDIYVPKICMSVIGSAFEVQRSGRQTCAIFVGEDVKTQAGPDLKALIASHKQQAAYIDALHEELRRLNVPSYRP
Ga0138362_1087048	Ga0138362_10870481	F099350	ESYDYCDYPPSMYGGAGEDFVRGSVWAADHSARGESTVRERFLRLWNFFPAAARVRMDVTRASPRRWSDADYHDLAKLFLCELDGRSVEVFGSDADDRWYKNDVLVLDDGWASVGPEGIMQYPFDHHGWELPEAKREQVHMSHMKG*
Ga0138362_1095662	Ga0138362_10956621	F037503	MHLGAASWLSFIEVELLIGCGGFTAYQLLINSECYKIYTAVRAWVLRSMSERERTQTII*
Ga0138362_1104846	Ga0138362_11048461	F088935	MASIGGLDVAFGARMQVVRTNVMCLALADTGLANATTVPKYILNTYKEALKGTVIEPDFLYIYEIADMTGSGFTTAAVANGLFNQDNSGDGTADVTALEVGGALRDIRQVPLSKNSAFADTTAAHAAEGSAHTLHNYYDINGNLALESVISLSAFAL
Ga0138362_1109590	Ga0138362_11095901	F005343	RCDSTLMFRFFVVGCISAVLGYNLPHHDRTAHFLSAMNSPDEEVMGPNMNFSEVSTTMKCIISLTIQYMVVYTALGICRSYLDFTKTPYADSQVQKALKSASETMFYAPMVCLMFVGFRMRVLQLTKGTGNPQDWVRMSMQAVTYSILANTLMVMLIPLVTAKEVKTDPETGVMENDGANPFESSAL