Sample 3300011298

Basic Information
IMG/M Taxon OID	3300011298 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0119794 \| Ga0138362
Sample Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 DCM_A metaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114292 | Gp0119794 | Ga0138362

Sample Name

Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 DCM_A metaT (Metagenome Metatranscriptome) (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	51472400
Sequencing Scaffolds	21
Novel Protein Genes	23
Associated Families	21

Dataset Contents

Total Genome Size

51472400

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	6
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales → Saprolegniaceae → Saprolegnia → Saprolegnia parasitica	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1
All Organisms → cellular organisms → Bacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales → Saprolegniaceae → Saprolegnia → Saprolegnia parasitica

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Southern Atlantic ocean

Coordinates

Lat. (^o)

-28.2362

Long. (^o)

-38.4949

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000351	Metagenome / Metatranscriptome	1248	Y
F001051	Metatranscriptome	792	Y
F005343	Metatranscriptome	403	Y
F007527	Metagenome / Metatranscriptome	349	Y
F011083	Metagenome / Metatranscriptome	295	N
F018182	Metagenome / Metatranscriptome	236	N
F034477	Metagenome / Metatranscriptome	174	Y
F037503	Metagenome / Metatranscriptome	168	Y
F040127	Metagenome / Metatranscriptome	162	Y
F042917	Metagenome / Metatranscriptome	157	N
F056636	Metagenome / Metatranscriptome	137	N
F060086	Metagenome / Metatranscriptome	133	Y
F071278	Metagenome / Metatranscriptome	122	N
F073591	Metagenome / Metatranscriptome	120	N
F077350	Metagenome / Metatranscriptome	117	Y
F083743	Metagenome / Metatranscriptome	112	N
F088935	Metagenome / Metatranscriptome	109	N
F090440	Metagenome / Metatranscriptome	108	N
F092109	Metagenome / Metatranscriptome	107	N
F099350	Metagenome / Metatranscriptome	103	N
F101226	Metagenome / Metatranscriptome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0138362_1005834	Not Available	581	Open in IMG/M
Ga0138362_1009518	Not Available	822	Open in IMG/M
Ga0138362_1017978	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	604	Open in IMG/M
Ga0138362_1024257	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	561	Open in IMG/M
Ga0138362_1024971	Not Available	613	Open in IMG/M
Ga0138362_1046580	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	595	Open in IMG/M
Ga0138362_1049278	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	661	Open in IMG/M
Ga0138362_1053784	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	576	Open in IMG/M
Ga0138362_1056593	All Organisms → cellular organisms → Eukaryota	764	Open in IMG/M
Ga0138362_1061848	Not Available	648	Open in IMG/M
Ga0138362_1062236	Not Available	623	Open in IMG/M
Ga0138362_1066714	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota → Saprolegniales → Saprolegniaceae → Saprolegnia → Saprolegnia parasitica	545	Open in IMG/M
Ga0138362_1073637	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	585	Open in IMG/M
Ga0138362_1076509	Not Available	548	Open in IMG/M
Ga0138362_1078916	Not Available	642	Open in IMG/M
Ga0138362_1084937	Not Available	518	Open in IMG/M
Ga0138362_1085055	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	649	Open in IMG/M
Ga0138362_1087048	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	633	Open in IMG/M
Ga0138362_1095662	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
Ga0138362_1104846	Not Available	621	Open in IMG/M
Ga0138362_1109590	Not Available	563	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138362_1000599	Ga0138362_10005991	F034477	KKRDIEQMEAKIADLTATIDALTKAIAALQAEIAEMQVQLKRAGEDRELENKDFQNVVADQRETQRLLTNALNVLKGFYDKAFMQTKQHQPAGPPPPPGFKEYKQSAGAGGVMGMMEQIIRDTETLEAEAIKAETDAQKAYESYVKDTNKSIEEKTRSITEKTGEKA
Ga0138362_1005834	Ga0138362_10058341	F077350	TDIQALLEELEGKLRGALDVLSPSVKAMCENLQQAAVDIRKDKDATMLWGTLNDLQVFLSLVQQICTSVGSQGPKVVEFDNALGESLGTLETVVVDSEDAEDVAVFIEESLIRAFDKWPNAEAELREIAVV*
Ga0138362_1009518	Ga0138362_10095181	F083743	KLLAALMSRVEGLRNFIARIKLTRKRLRKHIIAVNALFKLKFDENMANVGAATQVLADIGHLKLAPYNPKLNKIKQFKSFSEDTTSLIQLTTKALKGKTNCADKDECSGATKLAFQAYRKGLELNKAMGVNFEKERKVLGGMRDAIRQLLDKKTAKLNKLLAQIERIKGAMADDDYDAAKKSLGEHLKILAKSCAGMGAFEKQLKQKTTKLLSAMDNKGELPAKAPEVKADATGTEQ*
Ga0138362_1017978	Ga0138362_10179782	F007527	MVTPEQRRIKVFNKGTSLALKVKIPLGGHILPISIVSEILAAKNAQKKAKKNITSEAINNNIP*
Ga0138362_1024257	Ga0138362_10242571	F042917	ITLLVLSASSATALQVPLRSVKPKTLRFVEVAERIQTSEEKPETFSAGDYLNTLDRFGGPDSTEPANNIIASPFDAEPNAFDAMIDAAAEEAKTMLEGAVTTTLEEIEQDRKDEAAQDAVAAVEKTISTKLDETMEKIETAAVPMEEIEVGPVGEFLIKWGFKDDPRIPEDERIPAMQRIKDSGKA
Ga0138362_1024971	Ga0138362_10249711	F005343	LSAIASPDEEVMGPNLKFSKVSTTMSCIISLTIQYMVIYTALGVCRTYLDFQGTSHDSSPLAKALKHASETVFYAPMVCMMFVGFRMRVLQLSKGTGDPQDWVRFSMQAVTYSILANTLLVLLVPLFTASEVELEKETGELKTEGKNPFENAMLATIFTVIRYLSFLGLYVGFGCVCTGVFLYEPPAGVWDGPIPPLSPAVQCT
Ga0138362_1039171	Ga0138362_10391711	F000351	MIFTVLLGLAAAVDMHQKVTPVQKVIQLLQGMAAKGKKEKHEEQVQFAAYKQFCDDTTVEKQRAIKEATAKMEQLVAAIQKAEADAATLAKEIAQLDEDISVYEGDKKAATEVREMENADYLTTHKDYSESVDALERAIATLKKQAYDRTQLLQVNQLQLIPEHAKKVISAFLSQGDEL
Ga0138362_1046580	Ga0138362_10465801	F101226	RRGATRLAATPTDVRVLDHHLGGIMLGLDRVGDFLEAIAALEPKKIKSDKFQYPKTMSDPDWDGSISINTYTDYSTLYGPFTVHTYHEEWDSGTDIYATDAETGKDLMTYIVQCMRASGRYRGSLFDNDGRGDSERLREMDEVEADYAGLGKLYRGNIARDHGDDTYDIVYYRYDDGGRVRETRVAERLIRKLGV*
Ga0138362_1049278	Ga0138362_10492781	F018182	MNPNNISMKDTRDGVVVKADGRTLLAKLVFAGSARLAECGLGIDELRAAFKKAHGEEASKGTLTYQLNEQDEDALQLLDDADLALAKKHGSEPLKITSTEVDSRNVFDHASAELAKHGLDAPATELKKLLDVLQFKPRRLVKCGLAPPKALKCTAKGDEAEEPEDVLVVEALSIEDKEADATLDDAALAAKLQAEEYG
Ga0138362_1053784	Ga0138362_10537841	F056636	AAWAPLENNQAPDKLGLLRAQQMFFVTAPLHTLAIFQGTQDSWKILFAAKDASRWASFDSINAITTAKLWVLTMMVMLSSSIVVGLVRIGTAKKPFDEIERLLGVVMSFVFLSLTAVPSAAMFFHKRVTKAKAKPSLMDRCTAGVFGKALVITPSLFYMFLYSAAIVVLLALRGRARNAGF*
Ga0138362_1056593	Ga0138362_10565931	F060086	PFELDSNLLLSVDQHGEDRKRQLNSFNDHETPLLDDLADLLY*
Ga0138362_1061848	Ga0138362_10618481	F077350	EVAVTDSALANQIQKTEADPNQTDIQALLEELENKLRGALDVLSPSVKAMCDNLHKAAVDIREEKDATMLWGTLNDLQVFLSLVQQICTSVGTQGPSVVEFDNALGESLGTLETVVVDSEDPEEVAVFIEESLIRAFDKWPSAEAELRKIADV*
Ga0138362_1062236	Ga0138362_10622361	F092109	SGAGMVIPMDSGATDQCLPIDISGTVYGGYIRECVGQSTSALTGTLQNMVYTNPGCQGLPVDSDSAGVGVCLFDYRRTNSTTPYIILTANATAINVMKCSDNACSLNCVSGDSILLKDLGSCTDGSQAGPLYTGLSFKSMYVPNAGSLTPVVNESPSVTAYLYKNVDECNVDKKAGRVSAQSLGAATGALDDCLGPWSSGGQFNSTK
Ga0138362_1066714	Ga0138362_10667141	F011083	DGIVASTSDIIAASRVEDALRALPNEVLEGVTVKARTSDTVSLCTRFHDGVQHLGGYSETTDGNFKNSKMSTNYCETTYTMATGSNKMDFTIEFADKPGQTGVQYLFEVDINKRGAGSFPVSGGITGTGAYSVAEMNFNVNLGNLSELAECSDRGLDDGDGQCECFDGFRGLACEEQEAL
Ga0138362_1073637	Ga0138362_10736371	F073591	MWTWRALLLSGAVGVSVANILTVIVAYDAVAFPHQMISDYVATKPGAAVANWAWPLFILSHALFEARLFHRIKQHKAKAPQAYKYWVYSLYGLVAGWLSMVLCLVFDIRSCPR
Ga0138362_1076509	Ga0138362_10765091	F090440	GNEISGLKLATDLRLKRIYHCRITDVGEGHDLRVIIHKNVGG*
Ga0138362_1078916	Ga0138362_10789161	F040127	AGLAANQGVFGASAKETNLTDTNTTGHIKKESGVFTDSYSSQFIELGIGQFVSIGYEHTPDSVTTPTHTPREDGNTNLSSGSKVSVDFNDLNTTYLRVNLPFAAGVYVKAGTVSTDLDIKESLAGGRSYKNVSTDGSVIGVGYHKFINDSRIGVRLEGSYLELDNVSTDNGVSKTGATVANGGRNQVDASNLEGLQAKVAITITLGKD*
Ga0138362_1084937	Ga0138362_10849371	F071278	DIEDSLDPLFHNGSFITLRQMITASIIIAQMDPTTTSERGAKTPYDLDNSGVKIKFANQSDAVIAPSATNRAISERSSLAKVYDLHLFVNLAGTTDIIAARNNGPYATGAPFFYIVMATDTETGRSDSLTDSLLTVNLTQFPTGILATNQGGPQAETSVILPQDFD*
Ga0138362_1085055	Ga0138362_10850551	F001051	MGNALATDSIPVLVTLVDVHNPKSQDTFYFANVSTGGAASKVVGRSQTLSAEVSISTILTLTVYECPEPMFTPEHARSLGILRVPVERLAERYSSGIFQQWFNLDTKADPKLPPGDMTTVVQNFEESYQNAVTDIYVPKICMSVIGSAFEVQRSGRQTCAIFVGEDVKTQAGPDLKALIASHKQQAAYIDALHEELRRLNVPSYRP
Ga0138362_1087048	Ga0138362_10870481	F099350	ESYDYCDYPPSMYGGAGEDFVRGSVWAADHSARGESTVRERFLRLWNFFPAAARVRMDVTRASPRRWSDADYHDLAKLFLCELDGRSVEVFGSDADDRWYKNDVLVLDDGWASVGPEGIMQYPFDHHGWELPEAKREQVHMSHMKG*
Ga0138362_1095662	Ga0138362_10956621	F037503	MHLGAASWLSFIEVELLIGCGGFTAYQLLINSECYKIYTAVRAWVLRSMSERERTQTII*
Ga0138362_1104846	Ga0138362_11048461	F088935	MASIGGLDVAFGARMQVVRTNVMCLALADTGLANATTVPKYILNTYKEALKGTVIEPDFLYIYEIADMTGSGFTTAAVANGLFNQDNSGDGTADVTALEVGGALRDIRQVPLSKNSAFADTTAAHAAEGSAHTLHNYYDINGNLALESVISLSAFAL
Ga0138362_1109590	Ga0138362_11095901	F005343	RCDSTLMFRFFVVGCISAVLGYNLPHHDRTAHFLSAMNSPDEEVMGPNMNFSEVSTTMKCIISLTIQYMVVYTALGICRSYLDFTKTPYADSQVQKALKSASETMFYAPMVCLMFVGFRMRVLQLTKGTGNPQDWVRMSMQAVTYSILANTLMVMLIPLVTAKEVKTDPETGVMENDGANPFESSAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011298: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 DCM_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences