NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011295

3300011295: Marine microbial communities from the Southern Atlantic ocean - KN S17 O2min_A metaT (Metagenome Metatranscriptome) (version 2)



Overview

Basic Information
IMG/M Taxon OID3300011295 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114292 | Gp0125902 | Ga0138389
Sample NameMarine microbial communities from the Southern Atlantic ocean - KN S17 O2min_A metaT (Metagenome Metatranscriptome) (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size46237454
Sequencing Scaffolds30
Novel Protein Genes35
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available17
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin12
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium1
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Atlantic Ocean
CoordinatesLat. (o)-28.2362Long. (o)-38.4949Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000021Metagenome / Metatranscriptome6082Y
F000048Metagenome / Metatranscriptome3365Y
F000086Metagenome / Metatranscriptome2462Y
F000406Metagenome / Metatranscriptome1172Y
F003733Metagenome / Metatranscriptome471Y
F006551Metagenome / Metatranscriptome370Y
F018020Metagenome / Metatranscriptome237Y
F021318Metagenome / Metatranscriptome219Y
F021393Metagenome / Metatranscriptome219N
F025846Metagenome / Metatranscriptome200Y
F042932Metagenome / Metatranscriptome157N
F055787Metagenome / Metatranscriptome138Y
F062154Metagenome / Metatranscriptome131N
F063612Metatranscriptome129Y
F065855Metagenome / Metatranscriptome127N
F067833Metagenome / Metatranscriptome125Y
F076161Metagenome / Metatranscriptome118N
F086151Metagenome / Metatranscriptome111N
F088935Metagenome / Metatranscriptome109N
F097509Metagenome / Metatranscriptome104N
F097512Metagenome / Metatranscriptome104Y
F099438Metagenome / Metatranscriptome103N
F103314Metagenome / Metatranscriptome101N
F105006Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0138389_1007107Not Available569Open in IMG/M
Ga0138389_1010993All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium1012Open in IMG/M
Ga0138389_1013920Not Available958Open in IMG/M
Ga0138389_1014228Not Available699Open in IMG/M
Ga0138389_1014326Not Available595Open in IMG/M
Ga0138389_1017501All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis541Open in IMG/M
Ga0138389_1028201All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium767Open in IMG/M
Ga0138389_1030053Not Available541Open in IMG/M
Ga0138389_1031063All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium818Open in IMG/M
Ga0138389_1032190All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium581Open in IMG/M
Ga0138389_1033960All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1725Open in IMG/M
Ga0138389_1034465Not Available599Open in IMG/M
Ga0138389_1048606Not Available508Open in IMG/M
Ga0138389_1050883Not Available835Open in IMG/M
Ga0138389_1059801Not Available710Open in IMG/M
Ga0138389_1062306Not Available578Open in IMG/M
Ga0138389_1063130Not Available591Open in IMG/M
Ga0138389_1064301Not Available567Open in IMG/M
Ga0138389_1068692Not Available844Open in IMG/M
Ga0138389_1073640All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium737Open in IMG/M
Ga0138389_1076992Not Available507Open in IMG/M
Ga0138389_1079868All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium527Open in IMG/M
Ga0138389_1081979Not Available806Open in IMG/M
Ga0138389_1082476All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1580Open in IMG/M
Ga0138389_1086306Not Available529Open in IMG/M
Ga0138389_1090152All Organisms → Viruses → Predicted Viral1394Open in IMG/M
Ga0138389_1090586All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium903Open in IMG/M
Ga0138389_1094576All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium560Open in IMG/M
Ga0138389_1096513All Organisms → cellular organisms → Eukaryota558Open in IMG/M
Ga0138389_1096821Not Available648Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0138389_1007107Ga0138389_10071071F086151LGRTLKVNIMEQIDWESVIIKVEGMLDGDSEVQAIPSDVVSLARMLVETGNNNEGTRESLTTSIKGMLKPYPGYPWKRGNQGILPAAARAVVDSACEEIRAAAHTFFTETSSYSQPLLRKHGKSKGSPVYVDADDYANSLAKKARKSATELFRDGEWDGSLAGLADCSEYDYTEEE*
Ga0138389_1010993Ga0138389_10109931F003733MKALRTKVCTYAIALLAGIGFATSTLAGSSDFSGIFIAGHAELNVVAIDGSARTGRATTVAGTGGSDNIESTKGTIGGFAPTAGYEVGFNLPLGDTFFVTVGYADGGGKSAAIAKVDDANNTTNVSLHAKNPSWWYVAPAISIFDNSAVYFKLGQAKAQLTAQGQVTGAPGNLKGDMWGIGTTTIANNGLFFKTEAGAVQYDNFSITGIGGNTNRIVEGNPLVGY
Ga0138389_1013920Ga0138389_10139201F063612ALKSVARGSPADDATLVAEESGLKIPRREMTSKEGIDSSAL*
Ga0138389_1014228Ga0138389_10142281F065855MRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQGAIAPWDTFVSATDRSTGDPTVDIGIASLNIEGTGVGGKLNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEAGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQ
Ga0138389_1014326Ga0138389_10143261F006551GSYDPWAANATIDRDSSSTFDSTVESASGTIGTNGVLTDDTLRSFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDSSEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFKSQ
Ga0138389_1017501Ga0138389_10175011F000406MERYFYLICFATYGIEAGPNGFQLTFKEWMDQRSHLRAMIEEGKDKLEWYRQVDPQKLNTLKELINAPNYKENIGVLIKTIYEFAFLTYADLPRGPIKNNSMRKLAAKTLLEILPEDVGEEIHKKLEDHSTSPDFVTLIGLVSHHGKQDDPLAPLS*
Ga0138389_1028201Ga0138389_10282011F003733MKALRTKISTYAIALLATIGFATSTLAGSSDFSGIWITGHAEFNVVAIDGTHTTGAQTSGGSEDHDVGQGTIGGFAPTAGYEVGFNMPVGDTFFVTVGYADGGGESAAIAKSKSSDAAGTATTVTLHASNPSWWYIAPSISVFDNSAVYVKIGRADASLKAVGNVTGAPGDITGDMWGIGTTSIADSGLFFKTEAGAIQYDQFKITGIGGKSNVVVEGDPLVGYGHVAI
Ga0138389_1030053Ga0138389_10300532F055787QKSEHTFSTETPRPSAALETVDKSTQDFSPILKDARSGGFEGLSQVARNILSGKYYKPTPEEVGQW*
Ga0138389_1031063Ga0138389_10310632F067833VKIKVYGIVAMANVFQHLMSVMDQVNFVTLAGDLTVLMAQMKV*
Ga0138389_1032190Ga0138389_10321901F003733NVVAIPGSHTAGGAGSDSSGGTENVERSEGTIGGFAPTAGYEIGFNLPLGDTFFVTVGYADGGGESAAIAKVDDANTTTDVSLHASNPSWWYIAPSISIFDNSAVYFKIGQADASLKAIGDVTGTPNNISGDMWGIGTTSISDSGLFLKTEAGAVQYDQFKITGIGGDANRIVEGNPLVGYGHVSIGYKF*
Ga0138389_1033960Ga0138389_10339602F076161LTPRNRRAEAHRFMKSINFSSRYPKTGFRAFAEKPVAKSLLLPRFGGQKMPPQRASIPNRLTAWTVPQIAADPKERSKLLSSPPDPDAPTGKPVLRLDQCAGLTCSRAHL*
Ga0138389_1034465Ga0138389_10344651F006551SVRIAAGKDPNVFLGSHEIYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSDSGDATEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL*
Ga0138389_1048606Ga0138389_10486061F006551TVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVWLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDATEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGET
Ga0138389_1049926Ga0138389_10499262F088935MTSIGGLDVAFGARMHVVRTNVMCVAVASTGLANTTTVPKYMLNTYKEALKGTVIEPDFLYLYEVADMDGSFATTAAIHSNLFNQDNDGDGTADVTALEVGG
Ga0138389_1050883Ga0138389_10508831F097512VDKSIKDTSMILKDARAEGFEGLSTVARNILNGKYYTPSDDEIRGF*
Ga0138389_1058730Ga0138389_10587301F097509MRNVIYKKTEPKGMGVSTEDIKSLYFGQCVHNNSQIADEEHHEMFLAYDYVKDEALTHEEAVKIPYDDPRQYDIIYGSLDDLVKVKGEWVITDKKTTGSIDYFSKARSKPSESHVDQINRYRVLLKKCYNIDAERGAVIYISNKVESDKRDKPVVMSFKLDPIEGTLVDMIKKAREIKESMTKGTLPERTKCFLCDGMCPYATKCFGDNRSKWNATES*
Ga0138389_1059801Ga0138389_10598011F042932QDQVDNSEVTEEVTKSEEQISYENTVAKSIDTLADVIQSIAESQQGVEKAITEIHDRVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGEQVGLDSDRKNKNPPKKDPGGLKMQEKPVNKAEDEEDVVPEMVTKSEHEFVTETPRPGANLETIDKSLSKDYSPILKDARSNGFEGLSNVARDILNGKYYKPTAEEVGF*
Ga0138389_1060166Ga0138389_10601662F000021TGCVCACLFREFQLSASYEGLIETVPGVNLEVLKMDNYKLDDSKDTLFRGEFEVVKELLAAFPDGEGSKRMCDKIIDKNGPKPLGTGIKQLRENIAESKLSYEIMDDAAQAFLKTKIMDNIQKYFYLICFTGYLREQSLKVVEAASEEDKKQYGLKSGKMSTPTENLKVQKTFRAWIDDHVNFRTICEEGKGKLQWERDIPQDALDNLQNLANTDFQKNLGKIIHDIYLTGHNLFKDMPQGDHKKRAKYRFASKTLMRILPDNLKNEVEVLIADKTMTLDLYEILGQCTWGQAKSL*
Ga0138389_1062306Ga0138389_10623061F103314SIGAELDGQYSNNEGTITKGTGGSIAQVGAVDVGYSIPLSDTFLIGIGVSAIPGEAEISKADDAANAADITIKAEDFITYYLQPTISVSENSAVFLKIGASEADLKITGDYTGTASNELSGTTFALGTKTMFSSGMYFSAEAGYSDYDNIQVNDIGNADSACNQNGGNGCPSNGTTGDAKADPSTAFGQFSI
Ga0138389_1063130Ga0138389_10631301F099438MTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPSVRLMDLEKAYGKGNSEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDFTNDAIDFHLGLMGLEK
Ga0138389_1064301Ga0138389_10643011F065855KFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSYDVINVVETNTAQAAIAAWDTFVASTDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNTFLRGVASNGPRDYSYEAGTSELVGIPGIGLVLDNGIQQGHVHCVDTELEPNTALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQ
Ga0138389_1068692Ga0138389_10686921F021393VETSQRVSTEKAFHDSVKSSLETLTEVIQSVAETQKGVSDSIDTIDDRLKALETPSDLPLTPRGTAGGDDVGAKVTVPRDPYPQGTQAGLDDDRSGADKPASDKGGLKMQKKSDDTELIEKSEHSFTTETPRPNAAAETVEKSYQKDFSPILKDAREAGFEGLSSVAQNILSGKYYKPSDDEVRGF*
Ga0138389_1069648Ga0138389_10696481F000048ALRARFDKLKITSDEWVKKVDTLVKEWVLLDNTVTELNTWVAKDKSSEGENQFSLEKMESTLGELKNIFKEKEKLVEGL*
Ga0138389_1073640Ga0138389_10736401F003733MKALRTKLCTYAIALLTTIGFATSTLAGSSDFSGVWIAGHAELNVVAIDGTHTDGDSGGDLPYGISSGTIGGFAPTAGYELGFNLPLGDTFFVTVGYADGGGESAKIAGAKSPDTLSDVTVHASSPSWYYIAPSISVFDNSAVYFKIGRAEANLKAIGDVTGTLSGIDGDLWGIGTTSIADNGLFFKTEAGAVQYDQFILTGVGGSSGAIIEGN
Ga0138389_1076992Ga0138389_10769921F065855ETNTAQAAIAAWDTFVSSTTQSTGDPTIDIGIASLNIEGTGVGGKMNRVGMHQLTYAKFTGNTYLRGVASIGPRDYSYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQSETGRLITGAITPIAW*
Ga0138389_1079868Ga0138389_10798683F025846MASVSLPLGSVMDMQTAQMVVMKLIVVLLHHVKTKVYGIVVMDNVSQHPMYVMAQVNSVTQAGVLTVPMVQMKA*
Ga0138389_1081979Ga0138389_10819791F021318DKTVYATDGAPTYSFGEVNGTPIYNYNAHFDAVKTAKDKLGTSYMHDAFVDPEFRSLAEDYVSDIKSGGRQRQAALRSNVNSAVDIVNVWETVLGKRDRVYAGKNLAKEIAVPNLLISIDTVTKYTGMEKLDEGMRARVKELPYTRANFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVLAITESNTAQAAGGLWDTFTTNTDHSINDPTIDIGIASLNIEGSGVGGKLNRVGMHQLTFAKYTGNTFLRGVASNG
Ga0138389_1082476Ga0138389_10824761F076161RAEAHRFKKSINFSSRCPKTGFRAFAENPVAKSLLLPQFGGQKMPPQGASIPNCLTAWTVPQIAADPKERNNLLSSPTNPDAPTGEPV*
Ga0138389_1086306Ga0138389_10863061F105006VSLNTLKVFQSFSKEKMNKFTLLNSNGVARPGFYIEITEFPQGSEPGKAIYVDGRAEDDIIHFRYNPQTELLDAWHVGSPESKFTMRPITVSGRVVGLDVQFSHIPNFTAHFALDLSTESEDIVYDILAPPVHLAEMNEVSF*
Ga0138389_1090152Ga0138389_10901521F042932SQQGVEKAVSEIYERVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRRSKNPPKKDPAGLKMQEKPVHKAYEEDTEEDEVEKSYPEMVMKSNHEFSTETPRPGSAPETVDKSFTKDFSPILKDARENGYEGLSIVAQNILSGKYYKPTPEEVGGY*
Ga0138389_1090586Ga0138389_10905862F003733MKALRTKICTYAIALLASIGFATSTFAGSSDFSGIWIAGHAEMNVIAIDGTHSATGGVAAHANGGSEDSETAQGTVGGFAPTAGYEIGFNLPLGPVFFVTVGFADGGGESAAIAKVDDGQGTSKSDVSIHASNPDWWYIAPSISIFDNSAVYFKFGQARADLKAIGDVTGSPNDIDGDMYGIGTTSIADNGLFFKTEAGAIQYE
Ga0138389_1094576Ga0138389_10945762F062154MQSRRNAVDANGVKVLSVVNARPEPPVNSVANGVREPSVVNVRQEQPVNSVVNARPERLVNRVVNGVRAPSVVNVRPEQAVSVDRSPVAVVVREGQVVLCGCSL*
Ga0138389_1096513Ga0138389_10965132F018020TEKVAMILSGYSSLILEMRRVPIPDPVPPPREWVT*
Ga0138389_1096821Ga0138389_10968211F006551DPWAANATIDRDSSSDFDCTVESASGTIGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDSSEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL*
Ga0138389_1100664Ga0138389_11006641F000086IKKIKKRFHLKSAFEDLEKRQKIFMDTKNTIEGIYKSIQDNYDVMTMTLPDEKKDFVKKEVKSVTEKLVVVNKFEEKVKKIENFVNSLNEFDVSLKNINSWMKDAENQLMDIKSNSDKMTPEDRVSLTMELQEDISAKVEIIKKNIKDEEDLLPQGDKVPQDAQDFKDELKRIQDFVLDLQAKVMKECDNFSEDVKYWAEYKTGIKEFRPWLESAEKKSTEGLSKPQTLDEANAMFAATKDFDNNCIKNLKILDNAAGAANKMTTHKEADTEVVSLRDRYTKVKSTSDEWLKKVDTLVKEWQLLDNTVTELNSWVAKDRGAEGEQQFSLEKMESTLGELKNIFKEKEKLVENLNQQV*

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