3300011291: Marine microbial communities from the Southern Atlantic ocean - KN S19 250_B metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011291
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125912 | Ga0138395
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S19 250_B metaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43115002
• Sequencing Scaffolds: 36
• Novel Protein Genes: 41
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	3
Not Available	17
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	9
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003733	Metagenome / Metatranscriptome	471	Y
F006551	Metagenome / Metatranscriptome	370	Y
F021393	Metagenome / Metatranscriptome	219	N
F025320	Metagenome / Metatranscriptome	202	Y
F025846	Metagenome / Metatranscriptome	200	Y
F036025	Metagenome / Metatranscriptome	171	N
F042932	Metagenome / Metatranscriptome	157	N
F050311	Metagenome / Metatranscriptome	145	Y
F052640	Metagenome / Metatranscriptome	142	N
F055787	Metagenome / Metatranscriptome	138	Y
F060948	Metagenome / Metatranscriptome	132	Y
F062154	Metagenome / Metatranscriptome	131	N
F062832	Metagenome / Metatranscriptome	130	N
F063612	Metatranscriptome	129	Y
F065855	Metagenome / Metatranscriptome	127	N
F067833	Metagenome / Metatranscriptome	125	Y
F076161	Metagenome / Metatranscriptome	118	N
F081452	Metagenome / Metatranscriptome	114	N
F091007	Metagenome / Metatranscriptome	108	N
F098669	Metagenome / Metatranscriptome	103	N
F103410	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138395_100327	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	603
Ga0138395_102296	Not Available	521
Ga0138395_104837	Not Available	560
Ga0138395_107730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	657
Ga0138395_109162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	738
Ga0138395_110434	Not Available	545
Ga0138395_113109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	654
Ga0138395_115793	Not Available	503
Ga0138395_116529	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	500
Ga0138395_117005	Not Available	954
Ga0138395_118098	Not Available	626
Ga0138395_118189	Not Available	521
Ga0138395_118430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	617
Ga0138395_118861	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	686
Ga0138395_124178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	563
Ga0138395_124402	Not Available	606
Ga0138395_135536	Not Available	614
Ga0138395_137581	Not Available	858
Ga0138395_148578	Not Available	542
Ga0138395_149900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	644
Ga0138395_152243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	526
Ga0138395_157324	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	504
Ga0138395_159534	Not Available	732
Ga0138395_159645	Not Available	597
Ga0138395_163007	Not Available	985
Ga0138395_163827	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	763
Ga0138395_164960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	546
Ga0138395_166312	Not Available	861
Ga0138395_167165	Not Available	954
Ga0138395_169802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	527
Ga0138395_182109	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	718
Ga0138395_183094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	684
Ga0138395_187643	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	746
Ga0138395_190673	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	766
Ga0138395_192526	Not Available	551
Ga0138395_193466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	1048

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138395_100327	Ga0138395_1003271	F025846	KLTVAAKAVQMVNLHVLMVHVSMVHGHVMAWQTVLMAQTKLIANLHHVKIKDYLIVAMANVFLHLLYVMDQVNFVTQDGLLTVQMVQTKV*
Ga0138395_102296	Ga0138395_1022962	F055787	MQKKSDDTELIEKSEHSFTTETPRPNAAAETVEKSYQQDFSPILKDAREAGFEGLSSVAQNILSGKYYKPSDDEVRGF*
Ga0138395_104837	Ga0138395_1048371	F021393	DTENSEQVEETITKSAEAEEVETSQRVSTEKAFHDSVKSSLETLTEVIQSVAETQKGVSDSIDTIDDRLKALETPSDLPLTPRGTAGGDDVGAKVTVPRDPYPQGTQAGLDDDRSGADKPASDKGGLKMQKKSDDTELIEKSEHSFTTETPRPNAAAETVEKSYQKDFSPILKDAREAGFEGLSSV
Ga0138395_106277	Ga0138395_1062771	F103410	HPRASPFDALISMPAQHVLGRTPEGTSRTVLTDQIGLPKVSRSPQRCTFLHHPEASLEHASFRLLYHKTAQSLFSDTADHFCQHLRRHARVPDPGPAHCHSDDPKTTFLPISLAFDRLAQGPHDPGHTTPEGFACRFGCSTAPCYPEASQRPCLNLANRPKGLLAI*
Ga0138395_107730	Ga0138395_1077302	F050311	MKALRTKICTYAIALLASIGFATPTLAGSSDFSGIFVAGHAELNVVAIDGTHTDSSSGTNDLGTTSGAIGGFAPTAGYELGFNLPLGDTFFVTLGYADGGGESAAIATSKSPDNNSDVSIRASNPSWYYIAPSISVFDNSAVYFKIGRADLNLEAIGDVTG
Ga0138395_109162	Ga0138395_1091621	F003733	ERKNIMKALRTKICTYAIALLVGLGFATPTFAGSSDFSGIWIAGHAEMNVIAIDGTHSATGGVAAHANGGSEDSETAQGTVGGFAPTAGYEIGFNLPLGPVFFVTVGFADGGGESAAIAKVDDGQGTSKSDVSIHASNPDWWYIAPSISIFDNSAVYFKFGQARADLKAIGDVTGSPNDIDGDMYGIGTTSIADNGLFFKTEAGAIQYEQFKIVGIGGDASDVVEGNPLVGYGHIAIGYKF*
Ga0138395_110434	Ga0138395_1104341	F006551	DDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDASEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL*
Ga0138395_113109	Ga0138395_1131091	F003733	IWTYAIALLVSIGFATPTLAGSSDFSGIWIAGHAELNVVAIDGSHTSNTTNANSATRATRGAIGGWAPTAGYELGFNLPLGDTFFVTVGFADGGGESADIYKGDDAVNAADVVLTASNPTWFYIAPSISIFDNSAVYFKMGQAEADLKATGDVTGSPGNISGDLYGIGTTSIANNGLFFKTEAGAIQYDQFKITGIGGSSAAIVEGNPLVGYGHVAI
Ga0138395_115793	Ga0138395_1157931	F098669	METATRSRKQKWRLKEAEGLGRKRRVEEAERRELHESDQGLDPGHGLNPGRKVRRIDQAMDGASLVELLKLP
Ga0138395_116529	Ga0138395_1165291	F025846	MINLIVVMDHVSMTSGNVMAGQTVPMAQTKLTVATQHVKIKVYGIVAMASVSQHHMFVMAQMNSVTQ
Ga0138395_117005	Ga0138395_1170051	F063612	LKSVAGGSPADDAASVAEESGLKIPRRGAASKEEVYSPAL*
Ga0138395_118098	Ga0138395_1180981	F081452	MIPVLSLAQFAREDAVIFDASRIFKDPTNFNIIISDTVA*
Ga0138395_118189	Ga0138395_1181891	F025320	MAGVVKVNPTLSNTTNHFSGKTITAVTVDFAVNGTDFTATEMGALGAVQAAISTLTKEAFPIIMTQIRSDGSNDGQVFDMIFEGDFGTQKYDGSNSETFAAYLQTELRLLTSVGVGSVNLNGATVVAAT
Ga0138395_118430	Ga0138395_1184301	F003733	SRERKNIMKALRTKICTYAIALLGCIGFASPSLAGSSDFAGIFIAGHAEMNVVAIPGTHTAGADNNNDSSSLGSPGGTENVEVTNGTIGAMTPTAGYEVGFNLPLGDVFFVTMGYADGGGKKAALAKVRDQNNTSDISVLASQPDWFYIAPSISIFDNSAVYFKYGRSHVNLETVGDVTGSLSGIDGDMWGIGTTSIAANGLFFK
Ga0138395_118861	Ga0138395_1188611	F025846	MTHGSVMDMQTAQMVVTKLIVLLHHVKTKVYGIVAMANVFQHHMYVMAQVNSVTQAGVL
Ga0138395_118861	Ga0138395_1188614	F025846	GMTVLMAQMKPIVLLHHVKTKVYGIVVMASVSQQVMYVMAQVNSVTQAGVLTVPMAQMKA
Ga0138395_124178	Ga0138395_1241781	F003733	PTLAGSSDFSGIFIAGHAELNVVAIDGSARTGRATTVAGTGGSDNIETTKGTIGGFAPTAGYELGFNLPLGDTFFVTVGYADGGGKSAAIAKVDDANNTTNVSLHAKNPSWWYIAPAISIFDNSAVYFKLGQAKAQLTAIGDVTGAPGNLKGDMWGIGTTTIANNGLFFKTEAGAVQYDNFTITGIG
Ga0138395_124402	Ga0138395_1244021	F042932	QDQVDDSEEYYTEEVAKSEEQISYENTVAKSIDTLADVIQSIAESQQGVEKAISYFDERIKALETPSDLPLSPKGTQGGDDVGAKVTTPNDPYPVGDQVGLDSDRKTKNPPKKDPGGLKMQEKPVNKAEEEVSEPEMVTKSEHEFVTETPRPGANLETVDKSLSKDYSPILKDARTGGFDGLSNVARDILNGKYYKPTPEE
Ga0138395_128411	Ga0138395_1284111	F103410	PSNVSRRIRLTPRNRRAEAHRFMKSINFSSRCPKTSFELSLKNLRPKVCCSRSLVIKKCRPKGLQSLIASLPGPSHKSPQTRRSAATCFSAQLISTHPRASPFGALISMPAQHVLGRTPEGTSRTNLTDQIGPPKVSRSPQRRTFLHHPEASLKHASFRLLYHKIAEKLFSDTADHFCQHLRRHARIPDPGPAHRHSDDPKITFLPISLAFDRLAQGPYGPGHTTPEGFACRFGSSTAPSLPGGIATTVSQPSQSTQRPLAI*
Ga0138395_133166	Ga0138395_1331661	F103410	TRRSAATCFLAQPIPTHSRASPFDALISMPAQHVLRRAPEGTSRTVLTDRIEIPKVSRSPQRRTFLHHPEASLKHASFRLLYHKTAQKLFSNTADHFCQHLRRHARVPDPGPAHRHSDDPKITFLPISLAFDRLAQGPHDPGHTTPEGIACRFGCSTAPLLPGGIATTVSQPSQSTRRPLGHLTLCRT
Ga0138395_135536	Ga0138395_1355361	F052640	MVQVRTIDELEALYYGYNRNLLRKADAPITTSTVGVFNAIYGAYAWAQ
Ga0138395_137581	Ga0138395_1375811	F021393	DNSNEQVVESEITKSEEDTQRVDTEKSFQETVKSGFDTLTEVVQSIAETQKATQETLGGLDNRLKALETPTDLPLSPKGTAASDDVGAKVTVPRDPYPQGTQAGLDDDRNGEGKPASDKGGLKMQKKSDDTELIEKAEHTFSTETPRPNAALETVDKSIKDSSLILKDARAEGFEGLSNVARNILNGKYYVPSDDEVRGF*
Ga0138395_148578	Ga0138395_1485781	F055787	MQEKQNLSDVQKSEHTFSTETPRPSAALETVDKSTGDFSPILKDARAQGFEGLSQVARNILSGKYYKPSPEEVGQW*
Ga0138395_149900	Ga0138395_1499001	F003733	MKALRTKLCTYAIALLASVGFATSTLAGSSDFSGIWIAGHAELNVVAIDGSATTGQGDTVAGTGGSDNIETAQGTIGGFAPTAGYEIGFNFPLGDTFFVTVGFADGGGESAAIARADDATGTTDVSLHASDPNWWYIAPSISIFDNSAVYFKFGQAQADLKAIGDVTGVPGNIDGDMWGIGTTSIASN
Ga0138395_152243	Ga0138395_1522431	F076161	SINFSSRYPKTGFRAFAEKPVAKSLLLPRFGGQKMPPQRASIPNRLTAWTVPQIAADPKERSKLLSSPPDPDAPTGKPVLRLDQCAGLTCSRAHL*
Ga0138395_157324	Ga0138395_1573242	F067833	VKTKVYGIVAMANVFLHHMYVMDQVNFVTQAGVLTVLMV
Ga0138395_159534	Ga0138395_1595341	F063612	AQISVAGGSPADKVTSVAEESGLKIPGRETSSKEGVNSSVL*
Ga0138395_159645	Ga0138395_1596451	F065855	IHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQGAIAPWDTFVSATDRSTGDPTVDIGIASLNIEGTGVGGKLNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEAGTSELVGIPGIGLVLDNGIQQGHVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQSETGRLITGAIT
Ga0138395_163007	Ga0138395_1630074	F025846	TVMVTVPMMLMKPTVLLQHVKTRACGIVAMANVSQHPMYVMAQVNFVTQAGVLTVPMVQMKV*
Ga0138395_163827	Ga0138395_1638272	F067833	KLIVNLHHVKTRAYGIVAMANVFQHHMYVMDQVNFVTQAGVLTVLMVQMKA*
Ga0138395_164042	Ga0138395_1640422	F091007	MQSKINKREIDYKGQQLWLNPVDRTVYATDGAPTYSFGEVNGTPIYNYDAHFDAVKTAKDRLGTSYMHDAFVDPEFKSLAEDYVSDIKSGGRQRQAALRSNVNSAVDIVNVWETVLGKRDRVYAGKN
Ga0138395_164960	Ga0138395_1649602	F076161	SINFSSRCPKTGFRAFAEKPVAKSLLLPQFGGQKMPPQGASLSNRLTAWTVPQITVHLKERSNLLSSPTNPNAATGKPV*
Ga0138395_166312	Ga0138395_1663122	F062832	DGLSEQLTKFAEHLKGIDSRIKALETPTDLPAAPAGTTGSDNDVGADITVPAQPYPQGDQAGLDDDRANDNAPAGDSAPSMQEKPLHKSEKLVEKSQHTFTTETPRPGAAVEKAGQGQTDFSPILKDARAEGFEGLSNVARNILKGKYYTPTPEEVAGF*
Ga0138395_167165	Ga0138395_1671651	F063612	LRSVAGGSPVDGAASVAEKSGLKTSRREMTSKEGVYSSAL*
Ga0138395_169802	Ga0138395_1698021	F003733	ATVAGTGGSDNTETTQGTIGGFAPTAGYEIGFNMPLGDTFFVTVGYADGGGDSAAIAKVDDGAPTSGTDVSLHASNASWWYVAPAISIFDNSAVYFKLGQAKASLKAIGDVTGSPGNLEGDMWGIGTTTIANNGLFFKTEAGAVQYDNFTLTGIGGNTNRIVEGNPLVGYGHVSI
Ga0138395_182109	Ga0138395_1821092	F067833	VKTKVYGIVAMANVSQHHMYVMAQVNFVTQAGVLTVLMAQMKA*
Ga0138395_183094	Ga0138395_1830942	F050311	MKALRTKICTYAIALLSGIGFATSTLAGSSDFSGVWIAGHAEMNVVAIDGTHTTGSQTSGGSEDHESARGTIGGFAPTAGYEVGFNFPLGDTFFFTVGYADGGGDSAAIAKSKDGNNDSGAVDVTLHASDASWWYIAPSISIFDNSAVYVKYGVAKADLTAVGDVVGQPTPGRIEGDMWGVGT
Ga0138395_187643	Ga0138395_1876433	F062154	MQSRRNAVGANGVKVLSVVNARPEQLVLSVANGVKVLSVVNARPERLVNRVVNGVRAPSVVNVRPEQAVSVGRSPVAVVVREDQVVLCGCSL*
Ga0138395_190673	Ga0138395_1906733	F060948	HLTFLIFQVVVFFGLVLCCTHLSEITLTIAANIMHTIFNFKGKAYWWIFTDKQLSTDTMIRLAYGHYLSAFFMAYLGLIHGIDMHYDWKNETSFDGIDAEMS*
Ga0138395_192526	Ga0138395_1925261	F036025	DDTAREVAAKIILTKEMTMNIDKLAPIAAVIVAVIAVAVVGDVDVNPFAEGGGLNLEGNNQWFVLVLMAIGVVHGLMSPVTDHASQAMAIVAAFAFPRLADTLDSIPAIGMYLNQFVDQLAIAIAGYAIAALINETKSRIMAD*
Ga0138395_193466	Ga0138395_1934661	F050311	MKALRTKICTYAIALLASVGFATPLIAGSSDFSGVWIAGHAELNVVAIDGTHTNANTVAGTNVETAAGTIGGFAPTAGWEAGFNIPLGPVFFVTMGIADGGGDSAAIAKVRDANNIADVTLHASDPTWYYIAPSISIFDNSAVYVKFGQVQTDLKAVGDVTGTP