3300011289: Marine microbial communities from the Southern Atlantic ocean - KN S19 O2min_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011289
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125913 | Ga0138396
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S19 O2min_A metaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 36621494
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	8
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	4
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003733	Metagenome / Metatranscriptome	471	Y
F006551	Metagenome / Metatranscriptome	370	Y
F020371	Metagenome / Metatranscriptome	224	Y
F021393	Metagenome / Metatranscriptome	219	N
F042932	Metagenome / Metatranscriptome	157	N
F050311	Metagenome / Metatranscriptome	145	Y
F055787	Metagenome / Metatranscriptome	138	Y
F063198	Metagenome / Metatranscriptome	130	N
F063612	Metatranscriptome	129	Y
F074005	Metagenome / Metatranscriptome	120	N
F076161	Metagenome / Metatranscriptome	118	N
F084341	Metagenome / Metatranscriptome	112	N
F103410	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138396_103761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	666
Ga0138396_110726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	953
Ga0138396_112074	Not Available	960
Ga0138396_112771	Not Available	779
Ga0138396_114914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	640
Ga0138396_115067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	1153
Ga0138396_117626	Not Available	837
Ga0138396_119328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	513
Ga0138396_125221	Not Available	501
Ga0138396_138549	Not Available	509
Ga0138396_150030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	623
Ga0138396_150780	All Organisms → Viruses → Predicted Viral	1448
Ga0138396_152341	Not Available	615
Ga0138396_172523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	720
Ga0138396_173479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	1097
Ga0138396_174340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	655
Ga0138396_174587	Not Available	1102
Ga0138396_175497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	647
Ga0138396_177490	Not Available	681
Ga0138396_178651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	504
Ga0138396_179134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138396_103761	Ga0138396_1037611	F003733	LRTKIWTYAIALLVSIGFATPTLAGSSDFSGIWIAGHAELNVVAIDGSHTSNTTNANSATRATRGAIGGWAPTAGYELGFNLPLGDTFFVTVGFADGGGESADIYKGDDAVNAADVVLTASNPTWFYIAPSISIFDNSAVYFKMGQAEADLKATGDVTGSPGNISGDLYGIGTTSIASNGLFFKTEAGAIQYDQFKITGVGGSATAVVEGNPLVGYGHVSI
Ga0138396_110726	Ga0138396_1107261	F003733	MKALRTKICTYAIALLASIGFATSTLAGSSDFSGIWIAAHAEMNVVAIDGSSTTPGQGVTVAGTGGSDNTETTQGTIGGFAPTAGYEVGFNLPLGPVFFVTVGWADGGGKSAAIAKVDDGSPLSTTDVSLHASSPDWYYIAPSISIFDNSAVYVKFGQTTVDLKAIGDVTGAPNNIDGDMWGIGTTSIANNGLFFKTEAGAIQYDQFTITGIGGDANRVVEGNPLVGYGHLSIGYKF*
Ga0138396_112074	Ga0138396_1120741	F063612	ALMSVVGGSPADKVTSVAEKSGLKIPGRETSSKEGVNLLVL*
Ga0138396_112771	Ga0138396_1127711	F055787	TPRPNSAIETLEKSGGQDFSPILKDARAGGYEGLSQVAREILSGKYYKPSADEVGQW*
Ga0138396_114914	Ga0138396_1149141	F076161	NFSSRRPKTGFRAFAEKPAVKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAADPKERSNLLSSPTNPDAPTGKPV*
Ga0138396_115067	Ga0138396_1150671	F003733	MKALRTKISTYAIALLATIGFATSTLAGSSDFSGIWIAGHAEFNVVAIDGTHTTGAQTSGGSEDHDVGQGTIGGFAPTAGYEVGFNMPVGDTFFVTVGYADGGGESAAIAKSKSSDAAGTATTVTLHASNPSWWYIAPSISVFDNSAVYVKIGRADASLKAVGNVTGAPGDITGDMWGIGTTSIADSGLFFKTEAGAIQYDQFKITGIGGKSNVVVEGDPLVGYGHVAI
Ga0138396_117626	Ga0138396_1176261	F020371	VNSAVDIVNVWETVLGKRDRVYAGKNLAKEVAVPNLLISIDTVTKFTGLEKLDEGMRARVKELPYTRSTFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVLAITETNTAQAASAAWDTFVSSTDRSTGDPTVDIGIASLNIEGTGVGGKMNRVGMHQLTYAKFTGNTYLRGVASIGPRDYSYEAGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRVITGAITP
Ga0138396_119328	Ga0138396_1193281	F003733	HTDNDGEITQGVAGGFAPTAGYELGFNLPLGDTFFVTLGYADGGGDSARIATAHDDDDANGANVTLHASSPHWWYIAPSISIFDNSAVYFKLGQASANLKAIGDVTGGPNNIDGDLWGIGTTSIANNGLFLKTEAGAIQYEQFKIVGIGGDASDVVEGNPLVGYGHIAIGY
Ga0138396_125221	Ga0138396_1252212	F063198	VEIAKLYIVRMRLEENSRISEDRLILNAPSKIRINRVKVVNTGATEARSSGDVYPNPLGPIRNPSIIRNNTSGILVRRNNASDKKPKIAIKLNASNAVLTFIALR*
Ga0138396_138549	Ga0138396_1385491	F084341	DVGTKAYANRLEMDTGSKMQFMMPTSLMELKHVTVRGGGAEVHVSLEPVDHAVVGVPSHFPSQAKLKVAQHVWLKSNIIVSGRMRITLNHFAETVVGDDDHDATTDRPASKLIVRIMGRQTDVRLRKHAFLDVGTKAYANRLEMDTGSKMQFVMPTSLMELKHVTVRGG
Ga0138396_149310	Ga0138396_1493101	F103410	LAQPISTHPRASPFDALISMPAQHVLGRTPEGTSRTVLTDQIGLPKVSRSPQRCTFLHHPEASLEHASFRLLYHKTAQSLFSDTADHFCQHLRRHARVPDPGPAHCHSDDPKTTFLPISLAFDRLAQGPHDPGHTTPEGFACRFGCSTAPCYPEASQRPCLNLANRPKGLLAI*
Ga0138396_150030	Ga0138396_1500301	F076161	MKSINFSSRCPKTSFRAFAEKPAAKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAAYPKERSNLHSSPTNLDAPTGKPV*
Ga0138396_150780	Ga0138396_1507801	F021393	EDNSNEQVEATEVAKSDDAVQRVETEKSFQETVKSGFDTLTDVVQSIAESQKATQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPKDPYPQGVQAGLDDDRNGEGKPISDKGGLKMQKKSDEDTELIEKAEHTFSTETPRPNAALETVDKSIKDSSLILKDARAEGFEGLSVVARNILSGKYYVPSDDEVRGF*
Ga0138396_152341	Ga0138396_1523412	F074005	MVQVRTIDELEALYYGYNRNLLRKADAPITTSTVGVFNAIYGAYAWAQLNLEANAFGILPKYPWDKSGW
Ga0138396_171158	Ga0138396_1711581	F103410	LIASLPGPSHKSPQTRRSAATCFLAQPIPTHPRASPFDDLISMPAQHVLGRTPEGTSRTVLTDQIGLPKVSRSPQRRTFLHPPEASLEHVSFRLPYHKTAQKLFSNTADHFCQHLRRHARVPDPGPAHRHSDDPKTTFLPTSLAFNRLAQGPRDPRHTTPKGFACRFGCSTAPCYPEVSQRPCLNLANRPKGLLAI*
Ga0138396_172523	Ga0138396_1725231	F003733	MMKALRTKICTYAIALLVGLGFATPTFAGSSDFSGIFIAGHAELNVVAIDGTHTVGDGDEVTQGTVGGFAPTAGYEIGFNLPLGDTFFVTFALADGGGDSAAIAKSKDAQNGADVTLHASDPHWYYIAPSISIFDNSAVYFKLGRASADLKAIGDVTGAPGNIDGDLWGIGTTTIAGNGLFFKTEAGAIQYEQFKITGVGGSSNAVVEGDPLVGYGHVSIG
Ga0138396_173479	Ga0138396_1734791	F050311	MKALRTKISTYAIALLSSVMLATPTLAGSSDFSGIFIAGHAELNVVAIPGTHTAGADTTESAGNSTNVEVTEGAAGGFAPTAGYEVGFNLPLGDTFFVTVGFADGGGRSAAIAKVDDASGTTDASLHASNPSWWYIAPAISIFDNSAVYFKIGQAHADLKAVGDVAGANLDNIE
Ga0138396_174340	Ga0138396_1743402	F076161	PKTGFRAFAEKPVAKSLLLPRFGGQKMPPQRASIPNRLTAWTVPQIAADPKERSKLLSSPPDPDAPTGKPVLRLDQCAGLTCSRAHL*
Ga0138396_174587	Ga0138396_1745872	F042932	EQIVDQEEITKSDEEQTSYENTVAKSIDTLADVVQSIAESQQGVEKAITEIHDRVKALEKPTDLPLSPKGTQSGDDVGAKVTVPNDPYPVGQQVKLDSDRKDKNPPKKDPAGLKMQEKPVNKAESEEVVEVAQPEMVEKSQHQFSTETPRPGSAVETLDKSFTKDFSPILKDARAEGYEGLSKVAQNILSGKYYKPTPEEIGGF*
Ga0138396_175497	Ga0138396_1754972	F076161	SINFSSRCPKTGFRAFAEKPVAKSLLLPQFGGQKMPPQGASIPNRLTAWTIPQIAADPKEHSNLHSSPTDPNAPAGKPV*
Ga0138396_177490	Ga0138396_1774901	F006551	DRIVSSGAEETALGGSGSGYYDPWAANATVDRDSGTTFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEIYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSDTNDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL*
Ga0138396_178651	Ga0138396_1786511	F003733	SGIFIAGHAELNVVAIDGSSRTGAGNDGTVQGTGGSDDIEITQGTIGGFAPTAGYEIGFNMPLGDTFFVTVGYADGGGESAAIAKVNDQNSTTDVSLHASNPTWWYIAPSISIFDNSAVYFKIGQAEAALKAIGDVTGVPGDITGDMWGIGTTTIASNGLFFKTEAG
Ga0138396_179134	Ga0138396_1791341	F003733	IAGHAEMNVVAIDGTHSETTSEYEVDAGTVGGFAPTAGYEVGFNLPLGPVFFVTVGFADTGGGSATIADFRDQKNAADVSLQASDPTWYYIAPSISIFDNSAIYFKFGEVQADLKAIGDVTGSPNNIDGDMWGIGTTSIANNGLFFKTEAGAIQYDQFKLTGIGGNTTSKVEGNP