Sample 3300011287

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300011287

3300011287: Marine microbial communities from the Southern Atlantic ocean - KN S15 O2min_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information
IMG/M Taxon OID	3300011287 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0125892 \| Ga0138379
Sample Name	Marine microbial communities from the Southern Atlantic ocean - KN S15 O2min_A metaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	28983917
Sequencing Scaffolds	22
Novel Protein Genes	23
Associated Families	19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	2
Not Available	15
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	2
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic Ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003733	Metagenome / Metatranscriptome	471	Y
F006551	Metagenome / Metatranscriptome	370	Y
F021393	Metagenome / Metatranscriptome	219	N
F025588	Metagenome / Metatranscriptome	201	N
F025846	Metagenome / Metatranscriptome	200	Y
F042932	Metagenome / Metatranscriptome	157	N
F050311	Metagenome / Metatranscriptome	145	Y
F052640	Metagenome / Metatranscriptome	142	N
F055787	Metagenome / Metatranscriptome	138	Y
F063612	Metatranscriptome	129	Y
F065855	Metagenome / Metatranscriptome	127	N
F074005	Metagenome / Metatranscriptome	120	N
F076161	Metagenome / Metatranscriptome	118	N
F084341	Metagenome / Metatranscriptome	112	N
F084730	Metagenome / Metatranscriptome	112	Y
F093997	Metagenome / Metatranscriptome	106	N
F097512	Metagenome / Metatranscriptome	104	Y
F103314	Metagenome / Metatranscriptome	101	N
F103410	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0138379_100796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	581	Open in IMG/M
Ga0138379_102373	Not Available	948	Open in IMG/M
Ga0138379_103490	Not Available	871	Open in IMG/M
Ga0138379_111724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	828	Open in IMG/M
Ga0138379_123688	Not Available	604	Open in IMG/M
Ga0138379_124388	Not Available	814	Open in IMG/M
Ga0138379_129029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	809	Open in IMG/M
Ga0138379_130098	Not Available	516	Open in IMG/M
Ga0138379_130620	Not Available	887	Open in IMG/M
Ga0138379_131350	Not Available	646	Open in IMG/M
Ga0138379_137205	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	548	Open in IMG/M
Ga0138379_144172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	577	Open in IMG/M
Ga0138379_145600	Not Available	720	Open in IMG/M
Ga0138379_149473	Not Available	619	Open in IMG/M
Ga0138379_149513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	566	Open in IMG/M
Ga0138379_152891	Not Available	563	Open in IMG/M
Ga0138379_155142	Not Available	510	Open in IMG/M
Ga0138379_155890	Not Available	699	Open in IMG/M
Ga0138379_157650	Not Available	587	Open in IMG/M
Ga0138379_159072	Not Available	549	Open in IMG/M
Ga0138379_162651	Not Available	533	Open in IMG/M
Ga0138379_167524	All Organisms → Viruses → Predicted Viral	1140	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138379_100796	Ga0138379_1007961	F003733	KNIMKALRTKISTYAIALLSSVMLATPTLAGSSDFSGIFIAGHAELNVVAIPGTHTAGADTTESAGNSTNVEVTEGAAGGFAPTAGYEIGFNLPLGDTFFVTVGFADGGGDSAAIAKVDDGGPLSTTDVSLHASSPEWWYIAPSISIFDNSAVYVKFGQADADLKAIGDVTGAPNNISGDMWGVGTTTIASNG
Ga0138379_102373	Ga0138379_1023731	F063612	GVAGGSPADKVTSVAEESGLKIPGRETSSKEGVNSSVL*
Ga0138379_103490	Ga0138379_1034902	F074005	MVQIRTIDELEALYYGYNRNLLRKADAPATTSTAGVFNAIFGAYAWAQLNLEANAFGILPKYPWDKSGWR
Ga0138379_111724	Ga0138379_1117242	F050311	MKALRTKICTYAIALLASIGFATSTLAGSSDFSGIWIAAHAEMNVVAIDGSSTTPGQGVTVAGTGGSDNTETTQGTIGGFAPTAGYEVGFNLPLGPVFFVTVGFAEGGGDSAAIAKVDDGGAGSKTDVSLHASSPDWYYIAPSISIFDNSAVYVKFG
Ga0138379_120028	Ga0138379_1200281	F103410	WPKACCSRSLVVKKCRPKGLQSLIASLPGPSHKSLHTRRSATTCILAQPIPTHPRGSPFGALISMPAQHVLGRTPEGTSRTVLTDQIGLPKVSRSPQRRTFLHHPEASLEHASFRLPYHKTAQKLFSNTAGHFRQHLRRHARVPDPGPAHRPSDDPKTIFLPISLAFDRLAQGPHGPGHATPEGFTCRFGCSTAPLLPGGIVTTVSQPSQSTQRPLGHSTLCRTIRPESHI
Ga0138379_123688	Ga0138379_1236881	F103314	MNKLNKLLASVIAMTFLSATPLIAGSGDFAGPFIQVSAHSIGAELDGQYTDNEGNITKGTGGSIAQVGAVDVGYSIPLSDTFLIGIGVSAIPGEAEISKADDAANAADITIKAEDFITYYLQPTISVSENSAVFLKIGASEADLKVTGNYTGTASSELSGTTFALGTKTMFSSGMYFSAEAGYSDYDNIHVNDIGNADTQA
Ga0138379_124388	Ga0138379_1243882	F074005	MVQIRTIDELEALYYGYNRNLLRKADAPITTSTVGVFNAIYGAYAWAQLNLEANAFGILPKYPW
Ga0138379_129029	Ga0138379_1290293	F084730	SPTTVGYFSYLNRIITGIYFYDPSNRLYGYGSPKGALIFLVVFICRSKK*
Ga0138379_130098	Ga0138379_1300981	F084341	LEMDTGSKMQFMMPTSLMELKHVTVRGGGSEVLVSHEPPAHAVVGVPSHFPSQAKLKVAQHVWLKSNIIVSGRMRITLNHFAETVIGDDDHDASTDRPASKLIVRIMGRQTDVRLRKHAFLDVGTKAYANRLEMDTGSKMQFMMPTSLMELKHVTVRGGGSEVLVSHEPPA
Ga0138379_130620	Ga0138379_1306202	F097512	ILKDARAEGFEGLSVVARNILSGKYYVPSDDEVRGF*
Ga0138379_131350	Ga0138379_1313501	F065855	YTRANFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAATAAWDTFVSATDRSTGDPTVDIGIASLNIEGTGVGGKLNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEAGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRVITGAIT
Ga0138379_137205	Ga0138379_1372053	F025846	VPMVNLTVVPIVVHMVSVSMAHGHVMVQQTVLMAQMKLTVLLHHVKTKVYGIVVMASVSQHHMYVMDQLIPVTQAGGLTVPMVQMKA*
Ga0138379_144172	Ga0138379_1441721	F076161	NRRAEAHRFKKSINFSSRCPKTGFRAFAENPVAKSLLLPQFGGQKMPPQGASIPNCLTAWTVPQIAADPKERNNLLSSPTNPDAPTGEPV*
Ga0138379_145600	Ga0138379_1456002	F052640	MVQIKTIDELEALYYGYNRNLLRKADAPATTSTAG
Ga0138379_149473	Ga0138379_1494731	F055787	KSQHTFTTETPRPNAAVEKAGESQTDFSPILKDARAEGFEGLSNVARNILKGKYYTPTPEEVAGF*
Ga0138379_149513	Ga0138379_1495132	F076161	HRFKKSINFSSRCPKTGFRAFAENPVAKSLLLLQFGGKETLPQGASIPNRLTAWTVPQITADPKERNNLLSSPTNPDAPTGEPV*
Ga0138379_152891	Ga0138379_1528911	F063612	ALKSVAGGSPADDAASVAEESGLKIPRRGAASKEEVYSPAL*
Ga0138379_155142	Ga0138379_1551421	F065855	QRQSFDVLAITETNTAQAAAGVWDTFTAATDHSVNDPTIDIGIASLNIEGSGVGGKLNRVGMHQLTFAKFTGNTFLRGVASNGPRDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNTALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQSETGRLITGA
Ga0138379_155890	Ga0138379_1558902	F025588	IMTKTYEKFKKELAEDGMLHGEPGDENPSTTIHHSPNDPEIVRTASTTMTVPKYRLSEDGKGCNHTCAHWRDSSYCAEYYFKCDSTYTCDSWKDSGI*
Ga0138379_157650	Ga0138379_1576501	F021393	EDNSNEQVEATEVAKSDDAVQRVETEKSFQETVKSGFDTLTDVVQSIAESQKATQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPRDPYPQGTQAGLDDDRNGEGKPTSDKGGLKMQKKSEDDTELIEKAEHTFSTETPRPNAALETVDKSIKDSSLILKDARAEGFEGLSVVARNILSGKYYVPS
Ga0138379_159072	Ga0138379_1590721	F042932	QDQVDNSEVTEEVTKSEEQISYENTVAKSIDTLADVIQSIAESQQGVEKAISYFDERIKALETPSDLPLSPKGTQGGDDVGAKVTTPNDPYPVGEQVGLDSDRRNSNPPKKDPAGLKMQEKPVNKAEEEDVEMVTKSQHEFLTETPRPGSALETVDKSLSKDYSPILKDAREEGYEGLSKVA
Ga0138379_162651	Ga0138379_1626511	F006551	CTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQVDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDSSEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFKSQ
Ga0138379_167524	Ga0138379_1675241	F093997	VLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPKDPYPQGVQAGLDDDRNGEGKPASDKGGLKMQKKSEDDTELIEKAEHTFSTETPRPNAALETVDKSIKDTSMILKDARAEGFEGLSNVARNILNGKYYVPSDDEVRGF*

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