3300011284: Marine microbial communities from the Southern Atlantic ocean - KN S15 AAIW_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011284
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125893 | Ga0138380
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S15 AAIW_A metaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26643158
• Sequencing Scaffolds: 16
• Novel Protein Genes: 20
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003733	Metagenome / Metatranscriptome	471	Y
F006550	Metagenome / Metatranscriptome	370	N
F006551	Metagenome / Metatranscriptome	370	Y
F021393	Metagenome / Metatranscriptome	219	N
F042932	Metagenome / Metatranscriptome	157	N
F050311	Metagenome / Metatranscriptome	145	Y
F052640	Metagenome / Metatranscriptome	142	N
F062832	Metagenome / Metatranscriptome	130	N
F063612	Metatranscriptome	129	Y
F076161	Metagenome / Metatranscriptome	118	N
F097512	Metagenome / Metatranscriptome	104	Y
F103410	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138380_103699	Not Available	529
Ga0138380_107819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	630
Ga0138380_112560	Not Available	1383
Ga0138380_112761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	599
Ga0138380_113932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	956
Ga0138380_114528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	509
Ga0138380_114583	Not Available	954
Ga0138380_114804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	602
Ga0138380_128434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	714
Ga0138380_131048	Not Available	530
Ga0138380_137185	Not Available	587
Ga0138380_143669	Not Available	564
Ga0138380_149090	Not Available	750
Ga0138380_151631	Not Available	957
Ga0138380_152550	Not Available	625
Ga0138380_154670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138380_101785	Ga0138380_1017851	F103410	PTPTHPRASPFDALISMPAQHVLGRTPEGTSRTVLTDQIGLPKVSRSPQRRTFLHHPEASLEHASFRLPYHKTTQKLFSNTADHFCQHLRRHARVPDPGPAHRHSDDPKTTFLPISLAFDRLAQGPRDPGHTTPKGFACRFGCSTAPCYPEASQRPCLNLANRPKGLLAI*
Ga0138380_103699	Ga0138380_1036991	F062832	GSDNDVGADITVPAQPYPQGDQAGLDDDRQNDNAPAGDSAPSMQEKPLHKSETPKLVSKSQHTFTTETPRPGAAIEKAGQSQTDFSPILKDARAEGYEGLSQVARNILKGKYYTPTPEEVAGF*
Ga0138380_103699	Ga0138380_1036992	F052640	MTQIRTIDELEALYYGYNRNLLRKADAPATTSTAGVFNAIYGAYAWAQLNL
Ga0138380_107819	Ga0138380_1078192	F076161	MKSINFSSRYPKTGFRAFAEKPVVKSLLLPQFGGQKMPPQRASIPNRLTAWTVPQIAANPKERSNLLSSPTNPDALTGKPV*
Ga0138380_112560	Ga0138380_1125602	F006550	MQAKINKREIDYKGQQLWLNPVDKTVYATDGAPTYSFGEVNGTPIYNYDSHFDAVKTAKDKLGTSYYHDAFVDPEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAAKNLAKEIAVPNLLISIDTVTKFTGLEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAAWDTFVSSTTQSTGDPTIDIGIASLNIEGTGVGGKMNRVGMHQLTYAKFTGNTYLRGVASIGPRDYSYEAGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRVITGAIT
Ga0138380_112761	Ga0138380_1127611	F003733	ALRTKICTYAIALLVSIGFATPTLAGSSDFTGIFIAGHAELNVVAIDGTHTDADMAGAAVGSANGNGSTQGTIGGFAPTAGYELGFNLPLGDTFFVTVGYADGGGESAQIAGAKSDDGNSDVTVHASGPTWYYIAPSISVFDNSAVYFKIGRAEANLKAIGDVTGTLSGIDGDLWGIGTTSIADNGLFFKTEAGAVQYD
Ga0138380_113932	Ga0138380_1139322	F076161	MKSINFSSRRPKTGFQAFAEKPVVKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAADPKERSNLLSSPTNPCAPTGKPV*
Ga0138380_114528	Ga0138380_1145281	F050311	MKALRTKICTYAIALLTGIGFATPTLAGSSDFSGIFIAGHAELNVVAIDGSSTTPGQGVTIPGTGGSDNTETTSGTIGGFAPTAGYEIGFNLPLGDTFFVTVGFADGGGNSAAIAKVEDQNNTTDVSLHASNPSWWYIAPSISIF
Ga0138380_114583	Ga0138380_1145831	F063612	ARSVAGGSPGDNATSVAAESGLKTSRREASSKEGVYSSVL*
Ga0138380_114804	Ga0138380_1148041	F076161	SINFSSRRPKTGFRAFAEKPAVKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIAADPKERCNLISSPTNPDAPTGKPV*
Ga0138380_128434	Ga0138380_1284342	F076161	SINFSSRCPKTGFRAFAEKPVAKSLLLPQFGGQKMPPQGASIPNLLTAWTVPQTAADPKERSNLLSSPTNPDAPTGKPI*
Ga0138380_131048	Ga0138380_1310481	F006551	YDPWAANATIDRDSGTDFDSTVESASGTIGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSNSADSAEIGRLFALDTSDAEGYGYPRIGIQIAIPTEYYEATRRTPAYPFVNNAF
Ga0138380_137185	Ga0138380_1371851	F097512	GGQDFSPILKDARAGGYEALSKVAQGILSGKYYKPSTDEVAQW*
Ga0138380_143669	Ga0138380_1436691	F042932	EITKSDEEEQASYENTVAKSIDTLADVVQSIAQSQQGVEKAVSEIVERVKALETPSDLPLSPKGTQGGDDVGAKVTAPNDPYPVGDQVGLDSDRRSKNPPKKDPAGLKMQEKPVNKAYEEDTEEDEVEKSYPEMVTKSNHEFSTETPRPGSAPETVDKSFTKDFSPILKDARENGYEGLSIVAQNIL
Ga0138380_146198	Ga0138380_1461982	F103410	ASPFDALISVPAQHVLGRTPEGTSRTVLTDQIGLPKVSRSPQRRTFLHHPEASLEHASFRLPYHKTPQKLFSNTADHFCQHLRRHARVPDPGPAHRHSDDPKITFLPTSLAFDRLAQGPHDPGHATPEGFACRFGCSTAPCYPEATQRPCLNLTNRPKGLLAI*
Ga0138380_149090	Ga0138380_1490901	F021393	DNSNEQIEDTEITKSDESTQRVETEKSFQETVKSGFDTLTDVVQSIAESQKATQEVLGGLDNRLKALETPSDLPLTPKGTAAGDDVGAKVTVPKDPYPQGVQAGLDDDRNGEGKPASDKGGLKMQKKSDDTELIEKAEHTFSTETPRPNASIETVDKSIKDSSLILKDARAEGFEGLSTVARNILNGKYYVPSDDEVRGF*
Ga0138380_149090	Ga0138380_1490902	F052640	MVQIKTIDELEALYYGHNRNLLRKADAPVTTSTTGTFNAIFGAYAWA
Ga0138380_151631	Ga0138380_1516311	F063612	PKSVVGGSPADNVTSVTAESGLKTPRRGTGSKEHVYSSVL*
Ga0138380_152550	Ga0138380_1525501	F006551	YDPWSANATIDRDSGTSFDCTVESASGTIGTNGVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEIYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSDTNDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL*
Ga0138380_154670	Ga0138380_1546702	F050311	MKALRTKICTYAIALLASIGFATTSFAGSSDFSGVWIAGHAELNVVAIDGTSSSPGQGVTVAGTGGSDDTETTQGTIGGLAPTAGYEIGFNLPLGPVFFVTVGWADGGGESAAIAKVKDHNSKTDVSLHASSPSWWYIAPSISIFDNSAVYVKFG