3300011283: Marine microbial communities from the Southern Atlantic ocean - KN S14 170_B metaT (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011283
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125884 | Ga0138375
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S14 170_B metaT (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19965067
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	5
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003733	Metagenome / Metatranscriptome	471	Y
F006551	Metagenome / Metatranscriptome	370	Y
F025846	Metagenome / Metatranscriptome	200	Y
F050311	Metagenome / Metatranscriptome	145	Y
F063612	Metatranscriptome	129	Y
F076161	Metagenome / Metatranscriptome	118	N
F084341	Metagenome / Metatranscriptome	112	N
F093997	Metagenome / Metatranscriptome	106	N
F097512	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138375_101107	Not Available	555
Ga0138375_108173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	594
Ga0138375_112233	Not Available	516
Ga0138375_115085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	627
Ga0138375_115721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	558
Ga0138375_116168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	954
Ga0138375_118044	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	504
Ga0138375_131007	All Organisms → Viruses → Predicted Viral	1336
Ga0138375_131205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	681
Ga0138375_132223	Not Available	540
Ga0138375_132389	Not Available	918
Ga0138375_135169	Not Available	991
Ga0138375_139691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	586
Ga0138375_141675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	1107
Ga0138375_142123	Not Available	535
Ga0138375_144329	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138375_101107	Ga0138375_1011071	F006551	GVLTDDTLRAFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQTFRGTGVGIHVDSIYGIPFIPSKDAPSDSGDASEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL*
Ga0138375_108173	Ga0138375_1081731	F076161	RFKKSINFASRCPKTDFRAFAENPVAKSLLLPQFGGQKIPPQGASIPNRLTAWTVPQIAADPKERNNLLSSPTNPDAPMGEPV*
Ga0138375_112233	Ga0138375_1122331	F084341	TTDRPASKLIVRIMGRQTDVRLRKHAFLDVGTKAYANRLEMDTGSKMQFMMPTSLMELKHVTVRGGGSEVIVSHEPPAHAVQGVPSHFPSQAKLKVAQHVWLKSNIIVSGRMRITLNHFAETVVGDDDHDATTDRPASKLIVRIMGRQTDVRLRKHAFLDVGTKAYANRLE
Ga0138375_115085	Ga0138375_1150851	F003733	MKALRTKICTYAIALLGCIGFASPSLAGSSDFAGIFIAGHAEMNVVAIPGTHTAGADNNNDSSSLGSPGGTENVEVTNGTIGAMTPTAGYEVGFNLPLGDVFFVTMGYADGGGKKAALAKVRDQNNSSDVSVLASNPDWFYIAPSISIFDNSAVYVKYGRSHVNLEAVGDVTGTLSGIDGDMW
Ga0138375_115721	Ga0138375_1157211	F050311	MKALRTKVCTYVVSLLVSIGFATASFAGSSDFSGIWIAGHAEMNVVAIDGSATTGRATTVAGTGGSDNIETAQGTIGGFAPTAGYEVGFNLPLGPVFFVTVGVSDGGGDSAAIAKVNDANSTTDVSLHASDPTWYYIAPSISIFDNSAVYFKFG
Ga0138375_116168	Ga0138375_1161681	F050311	MKALRTKISTYAIALLATIGFATSTLAGSSDFSGIWIAGHAEFNVVAIDGTHTTGAQTSGGSEDHDVGQGTIGGFAPTAGYEVGFNMPVGDTFFVTVGYADGGGESAAIAKSKSSDAAGTATTVTLHASNPSWWYIAPSISVFDNSAVYVKIGRADASLKAVGNVTGAPGDITGDMW
Ga0138375_118044	Ga0138375_1180442	F025846	MVRGRVMDGVTALMVQMKLTVLLHPVKIKDYGIVAMANVYLHHMYVMDQENFVTPAGVLTVLLVQMKA*
Ga0138375_131007	Ga0138375_1310071	F097512	LEKSGGQDFSPILKDARAGGYEGLSSVAQQILSGKYYKPSADEVGQW*
Ga0138375_131205	Ga0138375_1312051	F003733	IMKALRTKICTYAIALLSGIGFATSTLAGSSDFSGVWIAGHAEMNVVAIDGTHTTGSQSSGGSEDHESARGTIGGFAPTAGYEVGFNFPLGDTFFFTVGYADGGGDSAAIAKSKDGNNDSGNGVDVTLHASDASWWYIAPSISIFDNSAVYVKYGVAKADLTAVGDVVGQPTPGRIEGDMWGVGTTSIASNGLFFKTEAGAIQYDQFRVTSIGGKTHAIVEGNPLV
Ga0138375_132223	Ga0138375_1322231	F097512	ETLEKSFTKDYSPILKDARSQGYEGLSVVAQNILSGKYYKPTPEEVGF*
Ga0138375_132389	Ga0138375_1323891	F063612	SVAEGSPADNAALVVEESGLQTPRGEMASKEGVDSSAL*
Ga0138375_135169	Ga0138375_1351691	F093997	LDNRLKALETPTDLPLSPKGTAASDDVGAKVTVPKDPYPQGEQVGLDSDRQGENKPKTDKGGLKMQQKSDDTELVEKSEHTFTTETPRPNAALETVDKSIKDESMILKDARAQGAEGLSSVARNILAGKYYKPSEDEIGAY*
Ga0138375_139691	Ga0138375_1396911	F076161	MKSINFSSRCPKTGFQAFAEKPVAKSLLLPQFGGQKMPPQGASIPNRLTAWTVPLIAADPKERNNLLSSPSNPGAPTGKPV*
Ga0138375_141675	Ga0138375_1416751	F003733	MKALRTKICTYAIALLTSIGFATSTLAGSSDFSGIWIAGHAEMNVVAIDGTHSETTSEYEVDAGTVGGFAPTAGYEVGFNLPLGPVFFVTVGFADTGGGSATIADFRDQKNAADVSLQASDPTWYYIAPSISIFDNSAIYFKFGEVQADLKAIGDVTGSPNNIDGDMWGIGTTSIANNGLFFKTEAGAIQYDQFKLTGIGGNTNRKVEGNPLVGYGHVSI
Ga0138375_142123	Ga0138375_1421231	F006551	SGTTFDATVESASGTLGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQVDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSNSADSAEIGRLFALDTSDAEGYGYPRIGIQVAIPTEYYEATRRTPAYPFVNNAFVEKGVYRTMGETVCR
Ga0138375_144329	Ga0138375_1443291	F006551	SSSEFDCTVESASGTIGTNGVLTDDTLRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSDAGDSSEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFR