3300011273: Marine microbial communities from the Deep Pacific Ocean - MP1492 (Metagenome Metatranscriptome) (version 2)

Overview

Basic Information

• IMG/M Taxon OID: 3300011273
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054909 | Ga0138352
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP1492 (Metagenome Metatranscriptome) (version 2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9879757
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): -25.2939
  • Long. (^o): -179.3141
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030135	Metagenome / Metatranscriptome	186	Y
F063612	Metatranscriptome	129	Y
F076161	Metagenome / Metatranscriptome	118	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0138352_101508	Not Available	955
Ga0138352_108486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha1_Bin1	767
Ga0138352_112260	Not Available	771

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138352_101508	Ga0138352_1015081	F063612	APKSVAGGSPADDAALVAEESGLKIPRREAASEEDVYSPAL*
Ga0138352_108486	Ga0138352_1084861	F076161	MKSINFSSRCPKTGFRAFAEKPAAKSLLLPQFGGQKMPPQGASIPNRLTAWTVPQIATNPKERSNLLSSPTNPDAPTGKPI*
Ga0138352_112260	Ga0138352_1122602	F030135	REELATLSSFTNIWHSTFAGCQFPDAILPGKEAIDLVAGPLN*