3300011265: Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 K-mer 55

Overview

Basic Information

• IMG/M Taxon OID: 3300011265
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121499 | Gp0155277 | Ga0151613
• Sample Name: Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 K-mer 55
• Sequencing Status: Permanent Draft
• Sequencing Center: Xcelris labs Ltd
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 276238558
• Sequencing Scaffolds: 24
• Novel Protein Genes: 25
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
Not Available	6
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. ITM-2016-00318	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment → Acid Mine Drainage Microbial Communities From Malanjkhand Copper Mine, India

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → acid mine drainage → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Malanjkhand, India
• Coordinates
  • Lat. (^o): 21.9985
  • Long. (^o): 80.697983
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000290	Metagenome / Metatranscriptome	1362	Y
F002122	Metagenome / Metatranscriptome	591	Y
F002516	Metagenome / Metatranscriptome	552	Y
F004378	Metagenome / Metatranscriptome	441	Y
F007201	Metagenome / Metatranscriptome	356	Y
F008217	Metagenome / Metatranscriptome	337	Y
F009359	Metagenome / Metatranscriptome	319	Y
F012680	Metagenome / Metatranscriptome	278	Y
F026246	Metagenome / Metatranscriptome	198	Y
F029962	Metagenome / Metatranscriptome	186	N
F032088	Metagenome	181	Y
F036615	Metagenome / Metatranscriptome	169	Y
F041412	Metagenome / Metatranscriptome	160	Y
F053270	Metagenome / Metatranscriptome	141	Y
F054178	Metagenome / Metatranscriptome	140	Y
F065018	Metagenome / Metatranscriptome	128	Y
F065540	Metagenome / Metatranscriptome	127	Y
F070665	Metagenome / Metatranscriptome	123	Y
F077506	Metagenome / Metatranscriptome	117	Y
F079699	Metagenome / Metatranscriptome	115	Y
F082990	Metagenome / Metatranscriptome	113	Y
F094346	Metagenome / Metatranscriptome	106	Y
F101676	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0151613_1005763	All Organisms → cellular organisms → Bacteria	3347
Ga0151613_1006533	Not Available	1371
Ga0151613_1009578	All Organisms → cellular organisms → Bacteria	2010
Ga0151613_1021594	Not Available	777
Ga0151613_1023556	All Organisms → cellular organisms → Bacteria	597
Ga0151613_1061225	All Organisms → cellular organisms → Bacteria → Acidobacteria	2192
Ga0151613_1089931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	739
Ga0151613_1161819	Not Available	711
Ga0151613_1171339	Not Available	666
Ga0151613_1263814	All Organisms → cellular organisms → Bacteria → Acidobacteria	1255
Ga0151613_1265183	All Organisms → cellular organisms → Bacteria	877
Ga0151613_1267375	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1192
Ga0151613_1305039	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	569
Ga0151613_1335149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	973
Ga0151613_1346556	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1797
Ga0151613_1374764	Not Available	759
Ga0151613_1384893	All Organisms → cellular organisms → Bacteria	1565
Ga0151613_1434144	Not Available	903
Ga0151613_1450465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1667
Ga0151613_1477174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2090
Ga0151613_1488193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	781
Ga0151613_1499025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. ITM-2016-00318	1558
Ga0151613_1503912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1701
Ga0151613_1567903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	627

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0151613_1005763	Ga0151613_10057631	F041412	MVRVTGSARLARPWPGAASREAALLLIAAAGAWAATVAL
Ga0151613_1006533	Ga0151613_10065332	F053270	GAPVAGRKIFLRFAQASDVERLTREGVITAPPPAKETWNQRIVRWLSEQRAGRRAVLVAEDSTGLLGILHLVFELPVGFKDPEAANGFDIAMIEGLHLRAGVPPEVGNEMVEEIQRIATKRKVTTLTFCIPMNQPRAIRQVKEWGFEEFRIMAEPSKMLAFFRKTV*
Ga0151613_1009578	Ga0151613_10095781	F053270	GAAVAGRKIFLRFAQASDVERLTREGVITAPPPAKETWNQRIVRWLSEQRAGRRAVLVAEDSTGLLGILHLVFELPVGFKDPEAANGFDIAMIEGLHMRAGVPPEVGNEMIEEIQRIATKRNVTTLTFCIPMNQPRAIRQVKEWGFEEFRIMAEPSKMLAFFRKTV*
Ga0151613_1021594	Ga0151613_10215941	F077506	MIELHERTRRISPTRIHEILLRYGAKSLVDPFMGLPTHLNYLKRHGIAVHGGDVLEWFVRVGEGIVVNDLTILRDHEVAEIVEMIPGRIYALDLFKAWEGVFFTEEQCVYLGVWFDNVRNLRSDGQTGLAILGLWRVFCYWLQKAQEPDEMPDLPPSELAWYYIRQTERWVASNMRRNTVRQSDVMQTLERQRADALLFAPPPRNALHHADPRIWMWEAWWQGNPYFTLE
Ga0151613_1023556	Ga0151613_10235562	F079699	LNPTSACAVKGAESQWVQIPPGNWFVPPGSNRSSRGGNEAAEASGVEDRLGDLASL*
Ga0151613_1061225	Ga0151613_10612254	F065540	STKISEVKVPQWLGDGKVYYLFPHKVEAGAVFHYGSYGDYWNPNLNGALRIFDVYVGRTW
Ga0151613_1089931	Ga0151613_10899311	F054178	XXXXRQVGRFLRGAFTTAARAGMPIVAVAIHGTREVLPSGTALLRRRPIKVEVIAVLRGEDARDRSRELIAAAIGEPLA*
Ga0151613_1161819	Ga0151613_11618192	F026246	WELLDRVTTFAQLRPPVRATLECIRSLGPDHALKQHAFTTSGDPDAWKRERGRRPILDPKVIAQAMGVSKAKVHQYLREARLILRQAFXXXXXX
Ga0151613_1171339	Ga0151613_11713391	F008217	RAGDTVDGRAQGERILAGDIDLQFLLFGETRLELIEARAAGLGMPKLKDGETAVIGHLGYEVDDLEDAKAELTRRGVGLQGEFKXXXXIFTVPETTFGVTLQLMEYKGRGKGA*
Ga0151613_1263814	Ga0151613_12638141	F065540	STKISEVKVPQWLGDGKAYYLFPHKVEAGAVFHYGSYGDYWNPNLNGSLRIFDVYVGRTW
Ga0151613_1265183	Ga0151613_12651831	F007201	VDEKKKSRWKVPVGLLATGLAGAAVVVLRGCWHGKMSWPVRSQGYSYQVCMGCGIKRLFDEEMFRAYGPYSYDLSRLIAWDRAQQPQVQPAPSHEQRPAS*
Ga0151613_1267375	Ga0151613_12673752	F082990	MNLLPKREIPEDILRDSVLAHIAAAYFSVGKRLERKTRCSATXXXXXXX
Ga0151613_1305039	Ga0151613_13050391	F101676	RLRNTFTRNPQNWFDTDETVSWTPKQVVRLTADYHQQNMINGFTPYYSLYGNVSYHRHWEGLEAEFELPAGISVEARYRRSGITRSNAALWPQIYSFDNTDLQTVIPSSTSNTAGLALRYRSALWNARAGYEWTGTDHPGFLIIPESNSRMFASIWLTPKPWLTFANDTNINVQNAFPSPALPNTPTDP
Ga0151613_1335149	Ga0151613_13351492	F012680	MDYSFTMVSCVMLPLEVSRDKNLLRSVLEPLDLGIWLDLGPRGLRLIPHDQSLPPTYFNPDGTVDLVNKGLYLDDVMSHMEHIAAALGCKLEWEWDF*
Ga0151613_1346556	Ga0151613_13465563	F029962	MKVISVCGIGLLLVLAGCKTAEKSQIVAAFQNAGGGQVSQAAPGGITSFLAQHEDLRKQLTPLCNAQRAKAPANWSSSDEGKICTANVQANFFGKPQLKSDGXXXXXXX
Ga0151613_1374764	Ga0151613_13747641	F094346	ATDEFIGPQVLTLAIPLGTLFVVLLWGFFQRRTHR*
Ga0151613_1384893	Ga0151613_13848933	F000290	XXXRLLAESLSLLLADLLRSVLADASPAMPADEDTVDRFRQLAGAPTVAAVSRPTGLGVTRAALAKRCVDWLKSLLLDAPATHASPALREFIDALALFPALFDGEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGTLLWPDAETA*
Ga0151613_1434144	Ga0151613_14341441	F065018	VSASFSQPAAPEAALRQAGDLGRRHGRAAVYWQIGDGGSGREFYQELLRGIASADPEVMGLYATPDLTARWDYERGNLAADLQLADGDPALDQAAEAYLGAAREEFWAE
Ga0151613_1450465	Ga0151613_14504653	F002122	MTEVRNLEHVGFSSEQIASLLLIKVLYQRGAYHEASPEYKRLAFARWLYEQGRLQS*
Ga0151613_1470185	Ga0151613_14701852	F002516	VARSRTVAGYAIPGIVVFFFWLVIVILAIILLXXXXXXXLLAYIVHWAGGAVLDLRLGHFILNIGFT*
Ga0151613_1477174	Ga0151613_14771744	F032088	MDEKTRQEIALHRWAVIAEAANGRLSGGERGAIXXXXXXX
Ga0151613_1488193	Ga0151613_14881931	F009359	XIPDHLAIGAPALSGGWELFRGVLGGPCAYGGNAAGFWWGQLKFAADPKIGLLTPTGGPDAAFLDQFLAARGAGL
Ga0151613_1499025	Ga0151613_14990253	F004378	VSELDRLETAMHECREMIREAHAATKDLRAAVREARQEVRALARDEVAAQVQLEVSRQLEELSGRXXXXXXX
Ga0151613_1503912	Ga0151613_15039122	F036615	XXXSVKSVKSFSLATTMCNERSKQPLNVCRIIERMISMADGLPVRSTGRWTFHLQLAQTLHFHITSEQEASGHIIIEGHDISTLLDYLYDHRELIYDATHDQETRHLEAMEAFDAPSAAPPEERRGERILYFDDGRERIRANI*
Ga0151613_1567903	Ga0151613_15679032	F070665	VPESQLHSDAYAATGAAEEEAADMIDETSGXXXXX