3300011237: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 2 - S13.2.20.a - transect 2, age 3 years, surface depth)

Overview

Basic Information

• IMG/M Taxon OID: 3300011237
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121480 | Gp0155452 | Ga0137008
• Sample Name: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 2 - S13.2.20.a - transect 2, age 3 years, surface depth)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bristol
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32695412
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes Of Arctic Soils
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → glacial feature → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Norway: Midre Lovenbreen, Svalbard
• Coordinates
  • Lat. (^o): 79.112223
  • Long. (^o): 12.175
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006620	Metagenome / Metatranscriptome	368	Y
F008258	Metagenome / Metatranscriptome	336	Y
F008637	Metagenome / Metatranscriptome	330	Y
F010995	Metagenome	296	Y
F022920	Metagenome	212	Y
F027713	Metagenome / Metatranscriptome	193	Y
F038495	Metagenome	165	Y
F050290	Metagenome	145	Y
F057767	Metagenome / Metatranscriptome	136	Y
F083539	Metagenome	112	Y
F099084	Metagenome	103	Y
F100036	Metagenome	103	Y
F104083	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0137008_100007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	46981
Ga0137008_100023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	35298
Ga0137008_100028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32837
Ga0137008_100063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	18377
Ga0137008_100105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11457
Ga0137008_100106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11217
Ga0137008_101041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1935
Ga0137008_101545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1674
Ga0137008_104851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1014
Ga0137008_107313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	806
Ga0137008_110263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	649
Ga0137008_113876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	530
Ga0137008_114185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137008_100007	Ga0137008_10000720	F057767	MNHSAVLAIAAQLDNDQARVADLTHRAQGAVNTLGQNWFGNDSTQFVSSWETHSAQLMGAADVLALMSRQARAQASDQQATSRA*
Ga0137008_100023	Ga0137008_1000236	F008637	VRRVGGFIQLAFATFWLVRGAASAGGGTGRLLTAAVPVIVVAVLVYAVRVTSGKGHRPTSAEARRIERSMTVASVLELVASFALPAIVIASGHSDWVLPSIAITIGPLLLWLDHLVQIPRYRPVGWALTLGPFILVLTMSGAALVTATGLVAGGLLLGTATAGFHDLSRLPLRLPPRLPSRLPTAPPPF*
Ga0137008_100028	Ga0137008_10002826	F100036	MSPVAAMSVPVHPSWTGIIEVLVWGLGGAVRWKGGSVVLQLPDHPHPDRVADLDALRLCLGQIGLPVVFDDSRVISPDASLVEFLDLLVGSGLMEASDHLAA*
Ga0137008_100063	Ga0137008_1000637	F010995	MVLDHGTGYRRRGCVRAIWQGWGVAAGPKHPVLILYEHALLGEGVATYLRNRISVEATVTSAHDPEAVRSALALCPAVIIFESSDPLQQLDLATLAPDAVLIDVSAVITRGSVVAPCSAGLEQILQAVRESSIVA*
Ga0137008_100105	Ga0137008_10010510	F104083	MFVDYEALARRQNALFGGLTPVHERAALVAFVGSGITDANRYEDASAAFDQLLLRAPTYEGALIQVFTHELRDESRGSDFLYLHYAGDPLTVGFLICALTGGGLMAGWKRS*
Ga0137008_100106	Ga0137008_1001062	F104083	MPLFLGFEALAQRRVALFEELTPLHEKTALLIFIGLGITDSSRYEDATAAFNELRRMAPTQKSEVIQVFTRKHREASRCSDFLYLHFAGDPLTFGLLICALTNGGLMAGWQLSSDPTPD*
Ga0137008_101041	Ga0137008_1010411	F006620	MTLSPWTDPDPQPGDFDADLAKLDPRYVERRDGDPDARLIVLVGVEGEDAQRLERIAEARGQTAADVVAELLRDAARALA*
Ga0137008_101041	Ga0137008_1010412	F022920	VAVVRVTISQLVATDVALDKLGARGISAGEVRQLIGNDHVVAGNPRGGGQSDTRRLLLGVTDGGRALTIVVEGTVDPTTWLIVTG*
Ga0137008_101545	Ga0137008_1015453	F099084	VTRCAACDAADLVAHLKVAGDAGPDGLIPTTDRFGTALADIVRCTACGHRQTEPMPADAVLESAYADAASEDYVAEEAGQRETARRALT
Ga0137008_104851	Ga0137008_1048513	F008258	VTQDPIEQALDKLGSLGVPVNDISEKAGAIVGQFGSFDLFEMLDQAMSIDPSQLDVGEMFAELKSKYDDLDPALKVPVAIAAGFVGARVVRWIVR*
Ga0137008_107313	Ga0137008_1073131	F050290	VRPPWESEEAAFAFLLRVLAVCIAIALLAVALKAIF*
Ga0137008_110263	Ga0137008_1102632	F083539	MRRRRPPHEVLAAWVVTGPLGHLYAGLADWAGVLIRYVRARGRLERM*
Ga0137008_113876	Ga0137008_1138762	F038495	VAIDQQRRLKHAAEQAHSAQDRGDLSGANEAWRRYVLIEDALRDPQELLDEGVALSKVAIDLWQQR*
Ga0137008_114185	Ga0137008_1141851	F027713	DRFELSERWCNWKGVDVIFGAARAAVEGGPLDPPLCEVVFDEEFDPLTVYTLEEAHAHLTSNRVRSMDITISHIDEDEARVTLNYSGDRLQLNGYGSDWTRARAAYDAAQAVLAGHFGITTFQLPKLPRDTVGETRKRLVIEELEAALRSAGAHKGHEVEIGEETLEWQ*