3300011227: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 10 - S13.1.50.a - transect 1, age 50 years, surface depth).

Overview

Basic Information

• IMG/M Taxon OID: 3300011227
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121480 | Gp0156001 | Ga0137475
• Sample Name: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 10 - S13.1.50.a - transect 1, age 50 years, surface depth).
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bristol
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25394805
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes Of Arctic Soils
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → glacial feature → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Midre Lovenbreen Svalbard, Norway
• Coordinates
  • Lat. (^o): 78.92777778
  • Long. (^o): 12.25416667
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003244	Metagenome / Metatranscriptome	498	Y
F003763	Metagenome / Metatranscriptome	470	Y
F005040	Metagenome / Metatranscriptome	414	Y
F005657	Metagenome / Metatranscriptome	394	Y
F006009	Metagenome / Metatranscriptome	384	Y
F006205	Metagenome / Metatranscriptome	379	Y
F010995	Metagenome	296	Y
F012736	Metagenome / Metatranscriptome	278	Y
F018331	Metagenome / Metatranscriptome	235	Y
F026952	Metagenome	196	Y
F056720	Metagenome	137	Y
F057767	Metagenome / Metatranscriptome	136	Y
F057774	Metagenome / Metatranscriptome	136	Y
F067309	Metagenome	125	Y
F103850	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0137475_100112	All Organisms → cellular organisms → Bacteria	10853
Ga0137475_100179	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7556
Ga0137475_100289	All Organisms → cellular organisms → Bacteria	5546
Ga0137475_100567	All Organisms → cellular organisms → Bacteria → Proteobacteria	3197
Ga0137475_100615	All Organisms → cellular organisms → Bacteria	3003
Ga0137475_101432	All Organisms → cellular organisms → Bacteria → Proteobacteria	1662
Ga0137475_101564	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1566
Ga0137475_101631	All Organisms → cellular organisms → Bacteria	1520
Ga0137475_102093	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1297
Ga0137475_103059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	1009
Ga0137475_103283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	963
Ga0137475_103385	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	943
Ga0137475_104155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	825
Ga0137475_108359	Not Available	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137475_100112	Ga0137475_10011211	F006009	MIEGEQKVLTRGLAAGTLIGLAIGLITALFIAMKPSSLQR*
Ga0137475_100179	Ga0137475_1001795	F003763	MKELRSALTDQLKKPDNPTTELSTLLRKIGREAHDNQIRPEQLIIIFKQLWNSLAESLRPQNVDQYERIRQRLVTLCIQAYYAEQ*
Ga0137475_100289	Ga0137475_1002892	F018331	VPENNHVRADCRIHFYNGAMTTRAGLEAEAITRLTEDIEPRAVRAILVQCLAGELAPSTAITQMLDASGAATVRLVIDDVTHRAATISRASDMLVHDRVDELTQVFVETVAAIAEINEAARSRSRPKQADLLRESTDPGAA*
Ga0137475_100567	Ga0137475_1005671	F012736	MTGKDTHSRDREPALQISQRLIRTRPSWRAASDGNARAAADACGHLYRDLSRWVGSDGCHALFSRALAQARPNHPALEQIQLHARKDPYIEGVAEAIMAQGDLATADALESMLANLIQLLSRLIGDDMATNLIERSLTAGGSGAP
Ga0137475_100615	Ga0137475_1006154	F056720	MGRRMNFAPRMPTIIVALVFVLIGVIGTFGGMLPSLAGMSSQALGAWSFVVAAVVMIAGMIFSGI*
Ga0137475_101432	Ga0137475_1014322	F006205	MDDNIKQTLEKLREELANAGKRLADMAEKGQKEWPAAAKRINEEYERLQALLDSAVDKLRKK*
Ga0137475_101564	Ga0137475_1015642	F057774	MVSVVMSIRMRKMFAEVRKTFSNAQRAEQDVRERQANWNF*
Ga0137475_101631	Ga0137475_1016312	F005040	MAVKVKIEPDKRYFQDRDGTFRAVENLSMTAMTPVYPATIHQMKRSMIFADDRAHAVVALDKNVRVTRNAEMSAVLITYTEPTDATWRALRIHMDAENSTAEIAREAKSQALIERRRKSAEAR*
Ga0137475_102093	Ga0137475_1020932	F005657	MADFTKEWIDHLKTQIAGRMTVVADKVDPQTYDELVTDLAWFTFRFAKDPDTKMRKVFR*
Ga0137475_102093	Ga0137475_1020933	F003244	VKWKSRRDPDGKIGDERVRTKFAWTPIDADDGYTYWLSPIVVREKLLPKIGRGGFEDEEEAWEVVEAKPIAGESKKKKK*
Ga0137475_103059	Ga0137475_1030591	F010995	VASEAQYQVVILYEHALLGEGIAKYLRARAGVESTVVSAFDATAVVSTLALDPAVVIFELNDPLQQMGLAALAPNAVLIDVSTVITRGFGSSHCVAGLEQILQAVGDCSTVARPA*
Ga0137475_103283	Ga0137475_1032831	F067309	RVTVPVGASRNCGRREGTPAMSHIIGRPNDDLLDVMLGHDADPEQAFIGGSEQGLLEGDGFDDHPLSDEPSVPEL*
Ga0137475_103385	Ga0137475_1033852	F026952	MPDTSFYYYLAYASALGLYGLYALSLYLRRKRLRGK*
Ga0137475_104155	Ga0137475_1041551	F057767	MNHPAVLAVAGRLDADQQKVADLLQRTTTAVSTLGQNWFGKDSTQFASDWAAHSKQLHLAADGIAAMAKQARTQASDQQATSTA*
Ga0137475_108359	Ga0137475_1083591	F103850	TREQIMASQNAFENAQITVEDIKGKLRTKIETSRKAIQESKKAAVLKNAASALAELDTYGTASTADKYLDEIKQRVAESKAAVEVATGGLDVDRIKTERKARQLQAQSILSEFEVEMGLKKPDAVREAAPFPTESTAQSTPQATPQKTGGA*