3300011182: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 4C3 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300011182
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0154766 | Ga0136707
• Sample Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 4C3 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 119572428
• Sequencing Scaffolds: 19
• Novel Protein Genes: 21
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7
Not Available	10
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002413	Metagenome / Metatranscriptome	561	Y
F003182	Metagenome / Metatranscriptome	502	Y
F011825	Metagenome	286	Y
F012454	Metagenome	280	N
F013890	Metagenome	267	Y
F021295	Metagenome	219	N
F025011	Metagenome / Metatranscriptome	203	Y
F026164	Metagenome	199	Y
F029047	Metagenome	189	Y
F043398	Metagenome	156	N
F052558	Metagenome / Metatranscriptome	142	Y
F055557	Metagenome / Metatranscriptome	138	N
F058097	Metagenome / Metatranscriptome	135	N
F065732	Metagenome / Metatranscriptome	127	Y
F078694	Metagenome	116	Y
F087118	Metagenome / Metatranscriptome	110	N
F090615	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136707_1026746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	875
Ga0136707_1026809	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	874
Ga0136707_1026942	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	871
Ga0136707_1032182	Not Available	774
Ga0136707_1038009	Not Available	694
Ga0136707_1039219	Not Available	681
Ga0136707_1042571	Not Available	644
Ga0136707_1045691	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	615
Ga0136707_1047612	Not Available	598
Ga0136707_1048992	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	587
Ga0136707_1049765	Not Available	582
Ga0136707_1051013	Not Available	573
Ga0136707_1051061	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	573
Ga0136707_1053258	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	557
Ga0136707_1056015	Not Available	539
Ga0136707_1056128	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	539
Ga0136707_1056656	Not Available	536
Ga0136707_1059364	Not Available	520
Ga0136707_1059735	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136707_1026746	Ga0136707_10267461	F002413	TEAPTPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLDGNFMNEEFKCENRDALVHMGKFARRIDKDVFARHFANWVPVMKHHDSVSPETVVCSDWRYINELRVCQDILWERGWKVRTVYVSTAGVGPANDEELDSIAEIRASHLFDQEYIFKPNARQQIMSEGRILAKSWRL*
Ga0136707_1026746	Ga0136707_10267462	F065732	MEALTIETVAWARKVGLSPDRVAFLLACPKYTRTGRNDQPAHIKAENPNHHLQKQGDCWWLRIRRRKTDILHNLGKDLETARRHRDEMLAAYDAGKPI
Ga0136707_1026809	Ga0136707_10268092	F013890	MGHVEYFDETTGTWTNLEDVPMFDTINCQLCNEPTEAHDIVAEIKFKDDQPIVGAWQCRKCHAVNG*
Ga0136707_1026942	Ga0136707_10269422	F025011	MPVIVTASQLRTVLGVSVSLYSDSYLDEIINTAEAVILPMLVANTSAVNAYKLESNTAYFYTAREHHFVAGQSVIVAGLPAPFTATHTVVTVTPYSFTAALTSSNVTLRDIIPTGTA
Ga0136707_1032182	Ga0136707_10321822	F090615	LIAALRVRKGWLRPDSSIVDKAAVEGLKKLGVLLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESLIEHQASWDPDKVYVERTDADIQEEMVTAIKTANADRLRAAKAKAAAGS
Ga0136707_1038009	Ga0136707_10380091	F090615	TLTRSEKLAQMRALQLAAPEPTDPSLIAALRVRKGWLRPDSPIVDKAAAEGLKKLGVLLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHEEMVTAIKTANADRLRAAEAKAAAGS*
Ga0136707_1039219	Ga0136707_10392191	F021295	MHEFEDDPIYEYAKSVMFQIMTVLYINGRTEAHVGAIMRLLGVDEEHARLHDDERIELDENFARMASELNMNELASVQIPQGTTIH*
Ga0136707_1042571	Ga0136707_10425712	F090615	LAAPEPTDPSLIAALRVRKGWLRPDSSIVDKAAVEGLKKLGALLCPPPDPDGKSIPERRFIDIATEYLKAVPQARLLIEESVAEHQAFWDSDKPYAEQSGDVAHKKLVTAIKMANADRLRAAEAKAAAGS*
Ga0136707_1045691	Ga0136707_10456911	F087118	MTDIFLSDGGSKYPALKFENVNDTHTGTVIEVKKLEDRDPAGTVKTWDNGDVRYVFVFTLNTADGIGNLWSRGAMVKAIREAAQSAGVSSMIGTKLTVKYTG
Ga0136707_1047612	Ga0136707_10476121	F090615	DPSLIAALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQARLLIEESAVEHQASWDPDKVYVERTDEEIHEKLVTAIKMANADRLRAAKAKAAAGS*
Ga0136707_1048992	Ga0136707_10489922	F078694	MPIHKATGPRGGKGFQYGTTGKVYPTRAQAVKQAQAIKASQAAAKKKK*
Ga0136707_1049765	Ga0136707_10497652	F090615	LIAALRVRKGWLRPDSSIVDKAAVEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQTRLLIEESAVEQQAFWDPDKVYVERTDADIHGNLVTAIKMANGDRLRAARAKASAGS
Ga0136707_1051013	Ga0136707_10510132	F058097	SELEWARFCVNNYHCTDWRVSDRETPKVHEYRSGENVVVLPPPEKISYIYNASLWLDTTIEEIRKHTERKIVIKRKGEGDFKQTLEKAHVIVSFGSVADVEALIRGVPVIGSPYSPASPVSNNIKDIENLTYFDRTAWLSSLAASEWHKDEMDKCWDRLKGQLDGVY*
Ga0136707_1051061	Ga0136707_10510611	F052558	MASAKKKVSDLPIIPVVLCSCLKNAVPGKLPAKLLREIEGKGKLHHCAADAYEAMDAAANAEGIDLSPSSRADTYRSLETQEYGFYQRHQLEPV
Ga0136707_1053258	Ga0136707_10532581	F012454	NPNSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWMPVAIAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPSI*
Ga0136707_1053258	Ga0136707_10532582	F003182	MHILQFDCSICSKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDSRIKELSDANL*
Ga0136707_1056015	Ga0136707_10560151	F026164	MTGHRRDAEPAIPVEDRSALLTTCGRLLGTVGLLIIVVLLPATFLVVAANLGLVDAPGWSGDNTTAFGFFLVVVPAGLALATVHFLLGGLVLARRFWPVVVTVLLLFAVVTLFPLGLRISWPFLSL
Ga0136707_1056128	Ga0136707_10561283	F011825	MEQQKKTPVEQYYYSEDEWARLGCGPLPPERDRNRLQDAHAKGNPKIDGKAVKGYN*
Ga0136707_1056656	Ga0136707_10566562	F055557	MKMRLTAEEEWDCARTALERIDRIKAKANDVSRYDQKLNFHEYVCQVAESIGAEFAVAKYFQIKDFDPRNSRFKETADVGSRIEVKWTKYDMGSLIIYESDRNTDIAVLVTGKSPHYYVKGWIPVAIAKNPRWKHRTQPTWWVDQYNLH
Ga0136707_1059364	Ga0136707_10593642	F043398	MPATGLLNEAMQDLKATLTAVTGIRCVSDPTKIVPNCVFLDAPSFETIAGGGNIVRVTIPVRVIGSGTAAQNVLENILSIVATVLGSSVVIMAGQPSSLEIGGATYPAYDLQ
Ga0136707_1059735	Ga0136707_10597352	F029047	MENSKLMQEQPYPDNTISEETRRMLDPTQNAMIKHQMAVFDLIDEICRPAHIPYKPKHADLIARLKRVATDLDLSGDATGWQTVSEAIEALGG*