3300011122: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, total

Overview

Basic Information

• IMG/M Taxon OID: 3300011122
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121704 | Gp0173503 | Ga0151656
• Sample Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, total
• Sequencing Status: Permanent Draft
• Sequencing Center: Toyama Prefectural University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18470177
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Dna From Seawater And Marine Sediment
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Environmental Dna From Seawater And Marine Sediment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.035
  • Long. (^o): 137.41472
  • Alt. (m): N/A
  • Depth (m): 803

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018931	Metagenome / Metatranscriptome	232	Y
F024889	Metagenome	204	Y
F075466	Metagenome	119	Y
F105891	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0151656_108220	Not Available	656
Ga0151656_110121	Not Available	846
Ga0151656_120167	Not Available	599

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0151656_104369	Ga0151656_1043692	F105891	MANISTYPIGTPAQGDLIPGTQKYTNSSGKTENLTRNFTVAQLAAFANSYSLGYTVYTAQLTAG
Ga0151656_108220	Ga0151656_1082202	F024889	MIFGVVILYQFFLCYVEGKIAKRANDSLKKNIDNLDDKA*
Ga0151656_110121	Ga0151656_1101211	F075466	MNDDKVLCSNVLTIRFDQLEDNRVNWYVEPDDKVWETQSLSLIELAGGGSPLSALAIRALWQMCLDGLVFDSLEQANSINFDVSKRFVAGPVVAELDLAPEGVTIN*
Ga0151656_120167	Ga0151656_1201671	F018931	RTYWIAYGDSSEDDVKGYGFVDPHQKLLSKWFIDETIDEAEWIAELAKHGIDPNPPEEEEQGEE*