3300010990: ELM10016_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)

Overview

Basic Information

• IMG/M Taxon OID: 3300010990
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121658 | Gp0160594 | Ga0139325
• Sample Name: ELM10016_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
• Sequencing Status: Permanent Draft
• Sequencing Center: Molecular Research LP (MR DNA)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7194568
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Cwc Coastal Marshes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → freshwater marsh → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Louisiana, Port Sulphur, Bay Sansbois east
• Coordinates
  • Lat. (^o): 29.45497
  • Long. (^o): -89.758933
  • Alt. (m): N/A
  • Depth (m): 0 to .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015864	Metagenome / Metatranscriptome	251	Y
F038154	Metagenome / Metatranscriptome	166	Y
F064729	Metagenome	128	Y
F065729	Metagenome / Metatranscriptome	127	N
F065810	Metagenome / Metatranscriptome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0139325_101356	Not Available	851
Ga0139325_103413	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	679
Ga0139325_103999	Not Available	654
Ga0139325_105709	Not Available	600
Ga0139325_108064	All Organisms → Viruses	551

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0139325_101356	Ga0139325_1013562	F015864	MTDFHYSTGEELEQFLYEKCREDPDLLATIISEYVWSLSVSKLDELEDFLSNNFGDD*
Ga0139325_103413	Ga0139325_1034131	F065810	CKTFQIKYDGKLSLLAKFILNSFQNKYIYYGIDDILYQFGFGSNEYETLLAILYSPVISLQNNYSVNFFDIWVSEIYIDEGSKPNKFLTNESQTFSQFTYITVTFFYKTKVPTKKQESLW
Ga0139325_103999	Ga0139325_1039991	F064729	MGELNDWLKYWRKTFAKCFKIHKDSRQHKQAYAELSDYLDKVQDSARREELDATVLWAVKFMQRMHELEREIGLHVLDKKVHSAKPVDHESRGKH*
Ga0139325_105709	Ga0139325_1057092	F038154	MKYEEFIHKGTDFYMDMVRLIDIKLKHRMELTSEEKEINGYILQVQEQNKLNELRNRFQKCWEIEE*
Ga0139325_108064	Ga0139325_1080642	F065729	MKKLEFRPVTITYVRTMMLTPTSETFEDWDVEPTQESVYDWAVEEFLTTIEEEAKDGEWRNFTIITEDQPLVEVEWGEEDYD*