3300010385: Giant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA . Combined Assembly of Gp0155292, Gp0155293

Overview

Basic Information

• IMG/M Taxon OID: 3300010385
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121514 | Gp0155292 | Ga0136809
• Sample Name: Giant kelp blades associated microbial communities from the kelp forest near Monterey Bay Aquarium, California, USA . Combined Assembly of Gp0155292, Gp0155293
• Sequencing Status: Permanent Draft
• Sequencing Center: Leibniz Institute
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 413904141
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Giant Kelp Blades Associated Microbial Communities From The Kelp Forest Near Monterey Bay Aquarium, California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Algae → Brown Algae → Unclassified → Unclassified → Marine Brown Algae (Kelp) Associated → Giant Kelp Blades Associated Microbial Communities From The Kelp Forest Near Monterey Bay Aquarium, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.619
  • Long. (^o): -121.9
  • Alt. (m): N/A
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F001217	Metagenome / Metatranscriptome	745	Y
F002549	Metagenome / Metatranscriptome	549	Y
F062773	Metagenome / Metatranscriptome	130	Y
F072745	Metagenome / Metatranscriptome	121	N
F078296	Metagenome / Metatranscriptome	116	N
F084839	Metagenome / Metatranscriptome	112	N
F100059	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136809_1012310	Not Available	4490
Ga0136809_1034055	All Organisms → Viruses → Predicted Viral	2558
Ga0136809_1103072	All Organisms → cellular organisms → Bacteria	1398
Ga0136809_1111002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1340
Ga0136809_1123833	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1261
Ga0136809_1144126	Not Available	1157
Ga0136809_1148455	Not Available	1138
Ga0136809_1180639	All Organisms → Viruses → Predicted Viral	1016

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136809_1012310	Ga0136809_10123103	F002549	MSKLLKLLGGSAAPLLDKAAEVADRFIDTPAEKKAFIKEAYQQEVLDRKEARELGKNKSTPDILTYVTLFIAIGLATAIFTDFLDWAALTEVQKGLITTFSGFFLRTLGDVYGYWFGSSMGSGDKTKDLTKLMRK*
Ga0136809_1034055	Ga0136809_10340551	F078296	MKNITKTFEEKSYSMSTGFTKDLGLFTVNGTIWSYVNPNTPYKNKYDHEISDIEINYEINGKYCMNAGFKELYEKLYGKDSFTKFEREVAEEFEAAYYETTPYSND*
Ga0136809_1103072	Ga0136809_11030722	F000918	MYQTNQQAWDEVTREFKESKRRTAICQQMFGQDNLIGLTDDQRNKFWESI*
Ga0136809_1111002	Ga0136809_11110023	F100059	MKNSFFPIIILFEKAVKEIQNGPKWKFIAKNYGHGNFFYGPKS*
Ga0136809_1123833	Ga0136809_11238333	F062773	MGLGAAIGNGIPFQDKRNEDIPEICFIITELDDFCEQETVIGDSRMLPELCTNP*
Ga0136809_1144126	Ga0136809_11441264	F078296	MKNITKTFEDKSYSMSTGFTKDLGLFKVNGVVWSYVNFNKDGRGTCDHEINDIELSYEINGTYCRYVGFKELYEKLYGENSFKKFEQQVTDEFEEAYFASTPYPNSQTQYDDRRIIYM*
Ga0136809_1144126	Ga0136809_11441265	F001217	FNRFEKYFIQTALKSAIEQAEVDVLAAETNGKRSIYAPGYFTMVGNEMIEKVSNMTLKKYQD*
Ga0136809_1148455	Ga0136809_11484552	F084839	MNRPYKYITVLDYSNGQVYLYDYDETEMPNAADFVKSRHDLDDVNYMVHQYKPALWTKDVYYCTKEQAYQLTNED*
Ga0136809_1180639	Ga0136809_11806393	F072745	MITFKQFFNENANHHSFIKYKTNFANLTDEQMDQIEYEMGIDWVDYRMERV*