3300010381: Methanogenic microbial communities from bioreactors in Yantai Institute of Oceanology, CAS, Yantai, China ? reactor 2

Overview

Basic Information

• IMG/M Taxon OID: 3300010381
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121487 | Gp0154553 | Ga0136547
• Sample Name: Methanogenic microbial communities from bioreactors in Yantai Institute of Oceanology, CAS, Yantai, China ? reactor 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Novogene Bioinformatics Technology Co., Ltd
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 55821570
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → unclassified Marinilabiliaceae → Marinilabiliaceae bacterium JC017	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Methanogenic Microbial Communities From Bioreactors In Yantai Institute Of Oceanology, Cas, Yantai, China
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Bioreactor → Methanogenic Microbial Communities From Bioreactors In Yantai Institute Of Oceanology, Cas, Yantai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: Yantai academy of sciences oceanology institute, Yantai, China
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 121.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009643	Metagenome / Metatranscriptome	315	Y
F017253	Metagenome	242	Y
F064893	Metagenome / Metatranscriptome	128	Y
F068418	Metagenome / Metatranscriptome	124	Y
F097703	Metagenome	104	N
F104566	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136547_102757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2155
Ga0136547_109882	Not Available	785
Ga0136547_111244	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → unclassified Marinilabiliaceae → Marinilabiliaceae bacterium JC017	719
Ga0136547_118137	Not Available	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136547_102757	Ga0136547_1027573	F064893	VRDHQGMSKLVRYEFMGSWLLFWALAITVIGIPLAILYLISGLLRIEHEMADPERFIAEFRARRG*
Ga0136547_109882	Ga0136547_1098822	F068418	VNSRIGDQVSLEFSDIDVKGTIESEGGSQRGDNLSNKSVQVSVGGSFDIEVSSADIIDGFVIEHNGDISVF*
Ga0136547_111244	Ga0136547_1112441	F017253	MRANVGSYTQGRTAGNFLSSRKAAWTERCPPKTTAAALDG*
Ga0136547_118137	Ga0136547_1181371	F009643	MSATWRVRLDRVLREGEVVGLYFTTAMLIVIEFCFVYWLHRIQIPEASSGAASGFIVMPPSYQKPRFEMTLLLTILAGLLFSVCWGLWNLWRKRTDTGSWETAVQSVKQRVRTTTSVAALTGIELALVT
Ga0136547_118137	Ga0136547_1181372	F104566	FLEPRNPFEPQKTRKPKMETVVFGMLFVIVAAVFLFFNLAAPRLEVRP*
Ga0136547_118181	Ga0136547_1181812	F097703	MFFFEQTFQTVLNGIDAPGGPMGAITNIANAILLLCALFAVYEAYARGGDARMIGIAAAKFL