3300010372: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day1

Overview

Basic Information

• IMG/M Taxon OID: 3300010372
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0134336 | Ga0114984
• Sample Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 243861443
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas caviae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → oil field production water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Alt. (m): N/A
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069722	Metagenome / Metatranscriptome	123	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114984_1041058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas → Aeromonas caviae	1250

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114984_1041058	Ga0114984_10410583	F069722	LNAGLDPKAKRERPDVDKGAAHEKALGHESGAALQE*