3300010271: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 6_20_20_110_A2 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300010271
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121361 | Gp0153729 | Ga0134095
• Sample Name: Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 6_20_20_110_A2 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 236514132
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: USA: Dartmouth College, New Hampshire
• Coordinates
  • Lat. (^o): 43.726
  • Long. (^o): -72.1429
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000255	Metagenome / Metatranscriptome	1449	Y
F000412	Metagenome / Metatranscriptome	1169	Y
F001938	Metagenome / Metatranscriptome	614	Y
F017851	Metagenome / Metatranscriptome	238	Y
F021959	Metagenome / Metatranscriptome	216	Y
F086518	Metagenome / Metatranscriptome	110	Y
F088752	Metagenome / Metatranscriptome	109	N
F088753	Metagenome / Metatranscriptome	109	N
F105007	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134095_1003125	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae	8230
Ga0134095_1013637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2229
Ga0134095_1018399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae	1743
Ga0134095_1028217	Not Available	1235
Ga0134095_1051839	Not Available	758
Ga0134095_1066580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium	622
Ga0134095_1073319	Not Available	578
Ga0134095_1087195	Not Available	505
Ga0134095_1088073	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134095_1003125	Ga0134095_10031253	F017851	MTSAASQQFFETFPPEVARAILEGRPLRIHAAKVSVVYEDGEVGFAIDTLPRDNRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0134095_1013637	Ga0134095_10136375	F001938	VIEMIEKIYKNKYMATCDNCGTGQECDSWADVMEFMREEGWKKKLVDGEWKHYCPECQEVKEP*
Ga0134095_1018399	Ga0134095_10183993	F021959	MSEQEVARLQENIKTLFKDVDELKKDIKEIKKQLANRLPLWATVLISLLTGIIGWLV*
Ga0134095_1028217	Ga0134095_10282171	F088753	YNNMTERGRILQELEMLKNTNDERLARRLSDWYGFVLSELTAGRVGDFIRSVPVDFVSLPFNGKRVENLINKCIKTLFEMAEDVRIPFETTAYMAESLRTGRKVRLRHAGQICSKKLGHALPVVLHKETITEMILREAKLLALSKVAVVVKLYCRIPGKFYPAVCCLSSDYDIAKRALRNITKDFVRDRMASFPRVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDSWEELHMQIARAVAKIIEYEVATEFEKEKYAREDDDWVLEIR*
Ga0134095_1032511	Ga0134095_10325111	F105007	KWYEKVKREISNGRRGVFMHTVPLGSTEDFYRNLGTAGDPANLASCLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEEEWVDMIR*
Ga0134095_1035496	Ga0134095_10354961	F105007	PLGSTEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVSNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSNRAGYAYGYLDELSVFADEKDAERIEGALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEWVDMIR*
Ga0134095_1051839	Ga0134095_10518391	F088753	LSDWYGFVLSELTSGRVGDFIRSVPADFVSLLFNGKIVEKLINKCTRTLFEMAEDGRIPFETTAYMAESLRTGRKFRLRYAGQLCSKKLGPVLPIILHKETMTDMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCMSSDCNIAKKVLRNITKDFVKDRMSSFPKVDLKKDFFYLESGYGFGENGIIFINKGRAYYRTKDGTHELPDADLDSREELFMQISRAVAKVIEYEVATEFEKEKFAREDDDWVL
Ga0134095_1066580	Ga0134095_10665801	F088752	VYNQIINILKENNVLINITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTSFYEEGDE*
Ga0134095_1073319	Ga0134095_10733191	F000412	SGVHPYRAIDRA*EPRIPSSCSLKAITHATGSKIGNSRSRWNRGTEYYPVGMNTHIEYPDIFF*KYNSPYHIEMGTYILIILL*AGGSVAVAQPISLR*N*GIFPQTCSTCLEGPHSKDSSGAHPCRAIDRA*EPRIPSPCILKAITHATGSKIGSSRSRWNRAQSTTL*
Ga0134095_1087195	Ga0134095_10871952	F000255	LVQGPMGWMGCAGCVKLQRDFVAQTFALIEPVHYVLQQVSCSYGTIPNSPKYYKMDQNISLGSNGVDWVHSLRKIPT*
Ga0134095_1088073	Ga0134095_10880731	F086518	GEAEPPRKRARPAGLMGLGRPAYPLSGPPRSHLSRVDSSHLLEFMSFTIAPLWTSLSWRYLRGKDRIGNPSLNLHLLCLIPKYLDLIFVGSVLWALLEDGCA*