Sample 3300010266

Overview

Basic Information
IMG/M Taxon OID	3300010266 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0120398 \| Gp0147150 \| Ga0129314
Sample Name	Orangutan individual fecal microbial communities from fecal samples from Wisconsin, USA - O1111 metagenome
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	232877675
Sequencing Scaffolds	16
Novel Protein Genes	16
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Orangutan Individual Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	43.78	Long. (^o)	-88.79	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F029589	Metagenome / Metatranscriptome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F036964	Metagenome / Metatranscriptome	169	Y
F039198	Metagenome	164	Y
F056682	Metagenome	137	Y
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F076190	Metagenome	118	Y
F088920	Metagenome	109	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0129314_1001437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16513	Open in IMG/M
Ga0129314_1001852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13224	Open in IMG/M
Ga0129314_1002417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10404	Open in IMG/M
Ga0129314_1004248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6149	Open in IMG/M
Ga0129314_1004788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	5516	Open in IMG/M
Ga0129314_1006517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	4244	Open in IMG/M
Ga0129314_1008448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	3432	Open in IMG/M
Ga0129314_1009819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3031	Open in IMG/M
Ga0129314_1015488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2074	Open in IMG/M
Ga0129314_1018118	All Organisms → cellular organisms → Bacteria	1819	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0129314_1001437

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

16513

Open in IMG/M

Ga0129314_1001852

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

13224

Open in IMG/M

Ga0129314_1002417

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

10404

Open in IMG/M

Ga0129314_1004248

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

6149

Open in IMG/M

Ga0129314_1004788

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5

5516

4244

3432

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

3031

Open in IMG/M

Ga0129314_1015488

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2074

Open in IMG/M

Ga0129314_1018118

All Organisms → cellular organisms → Bacteria

1819

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0129314_1001437	Ga0129314_10014375	F036964	MNVLKILFPALMVVGALGSLIVNIVGKGNHATSLQWLGACLLYTALMLRNRG*
Ga0129314_1001852	Ga0129314_10018525	F088920	VSAKPHYYPAFGIGVILHLILHFSQKAAIFAPKRAFLLLFVPTLFFFGLSVFFPQTSPKISGQTSLH*
Ga0129314_1002417	Ga0129314_10024173	F068855	VPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0129314_1004248	Ga0129314_10042484	F029589	MKEYEIVAKIYNACAGSGRPQTFFEEAALENPDDYVRSKHGKEFARFTKETLPTGQLLYRFDNGSVAYSYEFTEL*
Ga0129314_1004788	Ga0129314_10047884	F056682	MKTQPRAGKVANPPIGQSEMYSASFGTFPSKNRITFPIQEPEKIYENQEVL*
Ga0129314_1006517	Ga0129314_10065179	F056682	MKMQSRAGKVANQSIRQGEIYSASFGAFPSKNCSTFPIQELRKNRENQEVL*
Ga0129314_1008448	Ga0129314_10084483	F056682	MKMQSRAGKMANQSISQGEIYPASFGAFLSKNRSTFPIQELRKNREDQEVL*
Ga0129314_1009819	Ga0129314_10098192	F032286	MVKWVCQIVTPVRHRALVFNTRLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNVKPDSKHRSLPDSALFHADNRTERKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRAYPVRTVMQFSRFRCDCKTILAKNIALSRISKRS*
Ga0129314_1015488	Ga0129314_10154881	F056682	PHKQNTMKMQSRAGKVANQSIRQGEIYSASFGAFPLKNRSTFPIQELRKNRENQEVL*
Ga0129314_1018118	Ga0129314_10181184	F076190	GSITISVKNVFTAASRVSGRVWSLVRITVPNDLKSVRIRGRKTQNNSLYPYFQREPL*
Ga0129314_1026881	Ga0129314_10268812	F076190	VRTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVKIRVEKPQNNSLYPYFQREPL*
Ga0129314_1040140	Ga0129314_10401402	F074899	MARGLDPHADPNAEMRRWKQWNKQAATSSFLDEKTPKSIVQQGPEDSTAVGKDEVGSSNLPISSKDP*
Ga0129314_1042156	Ga0129314_10421561	F099269	KEASAAMRRPPFCARCTFECASGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*
Ga0129314_1059812	Ga0129314_10598122	F029444	MEVSEQLTGFELEDLVSRTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGPDGLRKRRPF*
Ga0129314_1087177	Ga0129314_10871771	F039198	MQITSREFESRKYVQIYLTEDELEEIKTKDIIDKLKKDKSSTAIFVTGNENYPEILEKMITKQVEQNKLKS*
Ga0129314_1088370	Ga0129314_10883702	F056682	VKMKSRAGKAANQPITQGEMYSASFGAFLSKNCIAFPIQELGKIYENQEVL*

Scaffold ID

Protein ID

Family

Sequence

Ga0129314_1001437

Ga0129314_10014375

F036964

MNVLKILFPALMVVGALGSLIVNIVGKGNHATSLQWLGACLLYTALMLRNRG*

Ga0129314_1001852

Ga0129314_10018525

F088920

VSAKPHYYPAFGIGVILHLILHFSQKAAIFAPKRAFLLLFVPTLFFFGLSVFFPQTSPKISGQTSLH*

Ga0129314_1002417

Ga0129314_10024173

F068855

VPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*

Ga0129314_1004248

Ga0129314_10042484

F029589

MKEYEIVAKIYNACAGSGRPQTFFEEAALENPDDYVRSKHGKEFARFTKETLPTGQLLYRFDNGSVAYSYEFTEL*

Ga0129314_1004788

Ga0129314_10047884

F056682

MKTQPRAGKVANPPIGQSEMYSASFGTFPSKNRITFPIQEPEKIYENQEVL*

Ga0129314_1006517

Ga0129314_10065179

F056682

MKMQSRAGKVANQSIRQGEIYSASFGAFPSKNCSTFPIQELRKNRENQEVL*

Ga0129314_1008448

Ga0129314_10084483

F056682

MKMQSRAGKMANQSISQGEIYPASFGAFLSKNRSTFPIQELRKNREDQEVL*

Ga0129314_1009819

Ga0129314_10098192

F032286

MVKWVCQIVTPVRHRALVFNTRLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNVKPDSKHRSLPDSALFHADNRTERKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRAYPVRTVMQFSRFRCDCKTILAKNIALSRISKRS*

Ga0129314_1015488

Ga0129314_10154881

F056682

PHKQNTMKMQSRAGKVANQSIRQGEIYSASFGAFPLKNRSTFPIQELRKNRENQEVL*

Ga0129314_1018118

Ga0129314_10181184

F076190

GSITISVKNVFTAASRVSGRVWSLVRITVPNDLKSVRIRGRKTQNNSLYPYFQREPL*

Ga0129314_1026881

Ga0129314_10268812

F076190

VRTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVKIRVEKPQNNSLYPYFQREPL*

Ga0129314_1040140

Ga0129314_10401402

F074899

MARGLDPHADPNAEMRRWKQWNKQAATSSFLDEKTPKSIVQQGPEDSTAVGKDEVGSSNLPISSKDP*

Ga0129314_1042156

Ga0129314_10421561

F099269

KEASAAMRRPPFCARCTFECASGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*

Ga0129314_1059812

Ga0129314_10598122

F029444

MEVSEQLTGFELEDLVSRTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGPDGLRKRRPF*

Ga0129314_1087177

Ga0129314_10871771

F039198

MQITSREFESRKYVQIYLTEDELEEIKTKDIIDKLKKDKSSTAIFVTGNENYPEILEKMITKQVEQNKLKS*

Ga0129314_1088370

Ga0129314_10883702

F056682

VKMKSRAGKAANQPITQGEMYSASFGAFLSKNCIAFPIQELGKIYENQEVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010266: Orangutan individual fecal microbial communities from fecal samples from Wisconsin, USA - O1111 metagenome

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences