Sample 3300010247

Basic Information
IMG/M Taxon OID	3300010247 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046783 \| Gp0111639 \| Ga0124945
Sample Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1800 MetaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1800 MetaT (Metagenome Metatranscriptome) (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	80585224
Sequencing Scaffolds	21
Novel Protein Genes	21
Associated Families	20

Dataset Contents

Total Genome Size

80585224

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	17
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria	3

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Ecosystem Assignment (GOLD)

Name

Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.963	Long. (^o)	-110.715	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.963

Long. (^o)

-110.715

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000855	Metagenome / Metatranscriptome	859	Y
F002229	Metagenome / Metatranscriptome	580	Y
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F008499	Metagenome / Metatranscriptome	332	Y
F032293	Metagenome / Metatranscriptome	180	Y
F057401	Metagenome / Metatranscriptome	136	Y
F065815	Metagenome / Metatranscriptome	127	N
F073593	Metagenome / Metatranscriptome	120	N
F073601	Metagenome / Metatranscriptome	120	Y
F075804	Metagenome / Metatranscriptome	118	N
F080677	Metagenome / Metatranscriptome	115	N
F081391	Metagenome / Metatranscriptome	114	N
F081941	Metagenome / Metatranscriptome	114	N
F083527	Metagenome / Metatranscriptome	112	N
F085749	Metagenome / Metatranscriptome	111	N
F097407	Metagenome / Metatranscriptome	104	N
F097413	Metagenome / Metatranscriptome	104	N
F098323	Metagenome / Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0124945_1002181	Not Available	1466	Open in IMG/M
Ga0124945_1011647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	579	Open in IMG/M
Ga0124945_1016419	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
Ga0124945_1021419	All Organisms → cellular organisms → Bacteria	3310	Open in IMG/M
Ga0124945_1022611	Not Available	656	Open in IMG/M
Ga0124945_1025727	Not Available	529	Open in IMG/M
Ga0124945_1030180	Not Available	1387	Open in IMG/M
Ga0124945_1036144	Not Available	595	Open in IMG/M
Ga0124945_1039504	Not Available	694	Open in IMG/M
Ga0124945_1048159	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
Ga0124945_1050991	Not Available	540	Open in IMG/M
Ga0124945_1052821	Not Available	689	Open in IMG/M
Ga0124945_1066967	Not Available	616	Open in IMG/M
Ga0124945_1078858	Not Available	1238	Open in IMG/M
Ga0124945_1079680	Not Available	595	Open in IMG/M
Ga0124945_1087714	Not Available	571	Open in IMG/M
Ga0124945_1088722	Not Available	874	Open in IMG/M
Ga0124945_1093963	Not Available	3397	Open in IMG/M
Ga0124945_1108773	Not Available	643	Open in IMG/M
Ga0124945_1110343	Not Available	907	Open in IMG/M
Ga0124945_1112445	Not Available	4880	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124945_1002181	Ga0124945_10021811	F032293	MRVRQIGTLVFDENTNIVVDANTQDAAGIGFNINKLFDPVPFSVEIAFKRATRQQALNAINALARELYTYAQRRQNNYLAVAGGVQVIIEDATGNATLRSYLRDSNVSLLSVETTAAGVIARARVDGVLNGQFVNPS
Ga0124945_1011647	Ga0124945_10116472	F085749	MTEIVMNQSELAAEIAARLRDEVAAAVKAQRVGVATELDEGDAEAGTSFGDFLKSVAYNDTRRLRAIYKSSKALDETSGAGGGFLVPTQFEQRIRAVGAPMLFDQLVAANRGPLTLRTNAAELA
Ga0124945_1016419	Ga0124945_10164193	F002229	MWRWMMVTLLTADGVEEIDYLPSDAEIRTSLDDAGLYGMVVDGVTWIRLSSGVGWWTVLAGRRVAATLAALGWCWVTDDGRGYWSPTLASVASEACAMLGVEVDDGD*
Ga0124945_1021419	Ga0124945_10214194	F073593	MFLKGLNKIHIHLGKIRFFLLIFVFVYFFSLSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFATLLINAAINLIVESAFPKIGTSQCPPGQVVRSNIFGDYCINLDINPVIDFAIVVINSLLLPASAIIAALFFLAGLYNLLISGGNATRVETGWKYMKNSILGLVAGLLS
Ga0124945_1022611	Ga0124945_10226112	F081391	MKSRSKSEPRWKRKERDAVRALQAIFGRVSDPSLARLLTSTGRAGHLTRFGVDGFVGNNP
Ga0124945_1025727	Ga0124945_10257271	F073601	MLQAKVTCLVMVLPAKRREGQRMFGVLHFAWRCAIKIMACGSIIRTLPVGKKAFVGMGVLLQQG*
Ga0124945_1030180	Ga0124945_10301802	F097407	MSSDFPSLKEEYHHLYEYVSTLAWMQYEQMKKKGKEYTGYVYFFGRTVHRLLHPLYFFHQTEEPKFWFEEQTFDPNNPAETFPTWEAKKAYLLVRFREKKFEIYDANFSRKVLSRYNHQIIQWLVKNNYHRLIEFDRCLGFYLDILNWTEEHFISFYENRLVNLLVTDYSPKTLSTTESWCQV
Ga0124945_1036144	Ga0124945_10361442	F004791	MPEPATIYDVDAVRVDRSVLTIREAATLLNRELAAPVIARLVRKAIGDQADRFPIRALKAVYERVLPQIFEPDAAIRARVEGLVPNVTTITLGEYHQFLEASERGIAFPEVAQTLLTKAYGDGILEE
Ga0124945_1039504	Ga0124945_10395042	F008499	VGTKKSRSEPRWKRKEREVIKFLQAAFGRVSDSTLARLLTRTGRVGHLTRFGFDGIVGNEPGFIVEVKARKGMLAKQTIEALLQTVDRAAQFGRIPLLAVVLGDDVPARTASGAKVDREWVLIPLRELKRLVGKEVSYE*
Ga0124945_1048159	Ga0124945_10481591	F075804	KHISSSLSRSKKYRLWQEAYWLVLLNQALKTFTEQHLQLKNPEIRAFVRLQGQVLHVKIAAKEPTVLAALKIAQKALLDFLHQNLLQKAQLVTQLKISFLVK*
Ga0124945_1050991	Ga0124945_10509911	F004307	HKEKEGIMFKELVKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNPEPELEDVFVFEFEVDDEELPHPIRVAKWVRKPPQLSHPGKNGKVSNLYKVIAALYGVSQMTDEQLQNAEEFVTSVIGREYQLTIETKPSGWYEIIHVAPVRRARRKEVMSGNEEVPF*
Ga0124945_1052821	Ga0124945_10528211	F057401	MLPKGNWEDFHCVVRAYRLARWANHAWGLLEPEHLAEVWNLAPSLKAFAELLPGYSVARGWVVEGPAGYGVLGPEYDYPETLVVDIGGNLQVRALVKPGETTVRYDHGYDGSVLRFAQASVAAGLVVGAEGYKAAPRYWARVARLLIIAEKPSDLEAEGIRDALRAMVGEEPAALEEFDGYFELTGPGILAGPEVFQPTAP*
Ga0124945_1066967	Ga0124945_10669671	F005302	MAHFNVIQGLYAGDFAVEISANGTIWTAVSDATVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPVEITLTFLYNETTNSASNTIYDYFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGPGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPVDLSG*
Ga0124945_1078858	Ga0124945_10788581	F097413	GSHLTGYFPIFDVENIKIEFGEIPRGRNRIDYAGPRVAAGENGVGIISVDSFTRNEWSIHTRFWDGESETYKDREYQIFTDDYFLSVARVAYYKGNWIAIAPIEREYKVANLGPDLKKRGNINQIEWKTFESDEVTYAGHAELITNRDFTELYAIFGARGDNSQIITIMKYKEDTNNEATGTFEKIAEINTSDTNGGVCYRPSGALDSQGNLHFTCDDTGGSLYYYTNAEGSWKKQLLTNNGLNGVLRIDEKDGIHVGFITFRPRSPAYMYSSDGNTWTRPIVANEIVNPKYGFTANMVGGVAIHGQNPYLLVAFEDWTNGGPRVGLIMFGAET*
Ga0124945_1079680	Ga0124945_10796801	F000855	SEARMDWLEDIWSKIVSWSDELSASLYNAVVEWINSVVAVWNGWMDALLHPADALPSVPQLRWVVDWLSDIVDYTALMYMLVDYVAYAQVVQQALIAQLTIVSIGLGFRAWLVIRRVVLVS*
Ga0124945_1087714	Ga0124945_10877141	F098323	PVWTQENTTTQFDNTILAKNQQPVVSIGKADTSVVPACQNLINEIVKCPSGNGTCVAEKLRKDNKLTENTKRCLGLNSNNLNENQKLDLINKVCLVLPAASSNDRTFFCQACIGRGVTKPSSWSDQEIVNKCNSTIPANNSSRKLVKLVPDNNGQLKEVLATRINVKEKLLGVARATEDNFYLTVANQLA
Ga0124945_1088722	Ga0124945_10887221	F081941	VVILALYIIFNILLFGILKIESTNYIISQFFSSLEILGILSLSLFIISGFHFILIQLSNLPYSDYKLEITTAIFFVLDFLLVIPTTFTTTQFELSPSLKLILDTIYMMTGSIYLVLAAGVFYMDLEGNKILAKRYTRWSVLVFLFFFFIIAMETVRRSMELNILLTFTGINLLLILVIMFADLKNLLNPYPNYQGKTNSIEIISFLLLSATILIGKTLHLVLML
Ga0124945_1093963	Ga0124945_10939631	F065815	PNKPMQPETNNSNPQANQPTESTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVTMVQVESLVETRILPKLQKFSQPTLLLVNFLVLMGLILGMYWLVSNFVNYLNITFWLK*
Ga0124945_1108773	Ga0124945_11087732	F005302	GNFAVEISTNGTIWTAVSDATVKIDDVELSRLSGEAYVGGSSDYATVTVGKREPVEITLTFLYNEVTNSATNTIYDQFESPTPVLAVRWSPTGVKPNARAYATSNDGTTTGLGVITNVTLSALDPSEAEPYVAMVTVRAPTLRQYVLGAAPTDLS*
Ga0124945_1110343	Ga0124945_11103432	F083527	MSDFYGVKIQRGQPIADAIRAVVAAKRRPVAARDRVFASEIFHCERKITFALLGCEPDEVRADSPSALMGDAIHAHLEALLSEAFPGRIETEVRV
Ga0124945_1112445	Ga0124945_11124455	F080677	MVTLPVFRSWLTSKIIVLQSPKLVRKITIGAMFLLLLAVMLTPVSVDQQTTFASEARSDSTTELPIVKQSTETVPLIIKLISSLGG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010247: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP NP_1800 MetaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences