3300010235: Terrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB2

Overview

Basic Information

• IMG/M Taxon OID: 3300010235
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121435 | Gp0154125 | Ga0136247
• Sample Name: Terrestrial oil reservoir microbial community from Schrader Bluff Formation, Alaska - SB2
• Sequencing Status: Permanent Draft
• Sequencing Center: Yale Center for Genome Analysis
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 320580580
• Sequencing Scaffolds: 33
• Novel Protein Genes: 44
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
Not Available	10
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.Bin155	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halarsenatibacter → Halarsenatibacter silvermanii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus pomorum	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Terrestrial Oil Reservoir Microbial Communities From Alaska
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Alaska, USA
• Coordinates
  • Lat. (^o): 70.4
  • Long. (^o): -148.7
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F005744	Metagenome / Metatranscriptome	391	Y
F009968	Metagenome / Metatranscriptome	310	Y
F021262	Metagenome / Metatranscriptome	219	N
F021489	Metagenome / Metatranscriptome	218	N
F022442	Metagenome / Metatranscriptome	214	Y
F024321	Metagenome / Metatranscriptome	206	N
F024777	Metagenome / Metatranscriptome	204	Y
F025288	Metagenome / Metatranscriptome	202	N
F025938	Metagenome / Metatranscriptome	199	Y
F027161	Metagenome / Metatranscriptome	195	Y
F031475	Metagenome / Metatranscriptome	182	N
F032289	Metagenome / Metatranscriptome	180	N
F033769	Metagenome / Metatranscriptome	176	N
F037272	Metagenome / Metatranscriptome	168	Y
F037711	Metagenome / Metatranscriptome	167	Y
F041512	Metagenome / Metatranscriptome	160	N
F042353	Metagenome / Metatranscriptome	158	Y
F047698	Metagenome / Metatranscriptome	149	N
F047964	Metagenome / Metatranscriptome	149	N
F049316	Metagenome / Metatranscriptome	147	N
F053364	Metagenome / Metatranscriptome	141	Y
F055749	Metagenome / Metatranscriptome	138	N
F058560	Metagenome / Metatranscriptome	135	Y
F074887	Metagenome	119	Y
F080199	Metagenome / Metatranscriptome	115	N
F082560	Metagenome	113	N
F082738	Metagenome / Metatranscriptome	113	N
F088355	Metagenome / Metatranscriptome	109	Y
F088950	Metagenome / Metatranscriptome	109	N
F090426	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136247_10000265	All Organisms → cellular organisms → Bacteria	25361
Ga0136247_10001090	Not Available	8968
Ga0136247_10001233	All Organisms → cellular organisms → Bacteria	8298
Ga0136247_10002485	All Organisms → cellular organisms → Bacteria	5287
Ga0136247_10002989	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	4735
Ga0136247_10003464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4318
Ga0136247_10003955	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	3998
Ga0136247_10004519	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	3704
Ga0136247_10006486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	2913
Ga0136247_10007733	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.Bin155	2586
Ga0136247_10009566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	2241
Ga0136247_10009878	Not Available	2190
Ga0136247_10010245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae	2133
Ga0136247_10014960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1616
Ga0136247_10015375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Halanaerobiales → Halanaerobiaceae → Halarsenatibacter → Halarsenatibacter silvermanii	1585
Ga0136247_10018833	Not Available	1368
Ga0136247_10019990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1309
Ga0136247_10021894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus pomorum	1222
Ga0136247_10025666	Not Available	1085
Ga0136247_10025814	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1081
Ga0136247_10025878	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Dysgonomonas	1079
Ga0136247_10028427	All Organisms → Viruses → Predicted Viral	1010
Ga0136247_10032261	Not Available	921
Ga0136247_10040464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	781
Ga0136247_10040559	All Organisms → cellular organisms → Bacteria	780
Ga0136247_10044007	Not Available	736
Ga0136247_10045448	Not Available	718
Ga0136247_10046856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	702
Ga0136247_10048200	Not Available	688
Ga0136247_10048813	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	682
Ga0136247_10049622	Not Available	673
Ga0136247_10049962	Not Available	670
Ga0136247_10067156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136247_10000265	Ga0136247_1000026528	F088355	MKNLTNKISIFAGQKGQLLLVILTIAMFVLAAGAPNSTVGIGR*
Ga0136247_10001090	Ga0136247_1000109013	F042353	METRTPPTTLTGDAYRRLERIIRDDLEHATVSSAMVLVDEGGRITINELVLRLEDRRMVTLMPLGVPAETAVDLRLDIYDDHLPGGHGWREATVAEDYAEELDDLVRVWHPEPDTAEEARL*
Ga0136247_10001090	Ga0136247_1000109014	F005744	MDEMFEIIKAGAPDAPPEQALYRIQHTYSDGSGGRLNVDWDGLLRLHELIHDRIALEGYVCETCDTKGCYRPATWEIECRGAGVSGRLIYSCDEHCPDPAILSPYDDIRRVVEE*
Ga0136247_10001233	Ga0136247_1000123311	F088355	MKNLTTKLNLFAGQKGQLVLAILTIALFVLAAGAPN
Ga0136247_10002485	Ga0136247_100024853	F037711	MLVRGRTTLSQQIDAKKRMGFAAGRGQGEGRLKFLTLKNLDVID*
Ga0136247_10002989	Ga0136247_100029893	F047698	MQQATAIVGVLIGFLILTQIGIFVCDAMIGASSVNESSELYEAQQTAIDTFVQCLSIVRILLIVAIVAVVFQYLQGAGLIPGFGGQRQGGY*
Ga0136247_10003464	Ga0136247_1000346410	F024777	MKRVKMDAELIFAEDVEVCPKCGSSEFWENRIIWVGDDPTDEELASIECKRCGAVFYARDYYRRRFGKLEDDDEEIPF*
Ga0136247_10003464	Ga0136247_1000346412	F058560	MGKSDVRCPKCGKTANEVELIYPRTDEQEERRERAFICQSCLYVFGESDVENNNYSFRNESLV*
Ga0136247_10003464	Ga0136247_100034642	F047964	MEEMMTSKKEMAIILNKIAAVFGKEIDEKLVSVYHLVLKNYPRMALADAAMLCVQENNFMPRPKDLVEKIEKYDLERKWQFVEPSMEKTYWVLFREEYESTDDISEAECREIFGEEYVGAPKVKKVSQTKNMSDEERRNEFRKLYQESKNVSQN*
Ga0136247_10003955	Ga0136247_100039553	F021262	MSKKYFIKFTTGKEFTGTAKEIVTQLRNESRLLAITPRKYAKLVAKSYEMSTGLKLRTWTYNSFVKSLGKSLMVMEFKEMK*
Ga0136247_10003955	Ga0136247_100039554	F049316	MDKDKRITTIVLDKEADRKSKIIAEFTGKTLSAIYREALDMYFSHFVNNDLLSEVNEYLDKLYWQYKIDNPHIFAAVQFGNLSNAAVMIAEAVKQLPQEPEAKKLIDEGMRLISILSK*
Ga0136247_10004519	Ga0136247_1000451910	F004383	ALQQEFDERPDVLDLKRRIERCEEERRQCIAQAQAEGVTKQGSFRLKVRTRKTRTVIPERFFARFGAETFVQCCTIAIGKAEALLGKGTFDDCCEVEVKEIGVSVEYERPEAVE*
Ga0136247_10004519	Ga0136247_100045192	F053364	VSDQLNDILVECCKLRGCYPLMHRTLHEFNWFCSCVIWGAGPSIDGEIATAEADGDEALAGALKDRRNEENGIRDRFNDRYKYGADELIRFAEAYREWCREQYGDEEVGA*
Ga0136247_10004519	Ga0136247_100045193	F009968	MRSNSCVGCRSHYRERHWWIFEIDFCGLTGDVVGFECPIGCIDTRGCSAYERAFSWPRGAIA*
Ga0136247_10004519	Ga0136247_100045198	F003987	MIPALPCGTFADSETPAGAFYVAAFEPGDQPHHVGEYRIDVVIRALLALRAYGYDDVEIGSIESGDHTFLLLIGLDGEARFGDRQLGCIAVAPVGVE*
Ga0136247_10006486	Ga0136247_100064863	F025288	MKNKWIWITLMVIVIFGLIAGAGALGYQVGLRSANALAPQTDEDRALPRQLMPWLRNAPDGGIIRRPTGFIGYFFLFPLGLLLRLAILVLVVWLVVKVAKAAWNGGNHKSKPAEAVITQTPEKTPEAMVSAAPPEETAPPSEAPQGGEK*
Ga0136247_10006486	Ga0136247_100064864	F031475	MGANTSDSSQDSLNANPQKQREKLTQLDFLTLEMMGTSLEELRELLDEEELQAYFAFLRRQSSDLDSTSP*
Ga0136247_10007733	Ga0136247_100077334	F082738	MKTNAKGRRCAPTVTARRLEQFPGKGTAYIRDGTPNPRLTRPEDYGWTEISDAEIAKFARLGYDLWYKTASTGGAHRVYRSLKKAGQK*
Ga0136247_10009566	Ga0136247_100095663	F025288	MKNKWIWITLMVIVIFGLIAGAGALGYQVGLRSANALASQTDEERALPRQLMPWLRNAPDGGIIRRPTGFIGYFFLFPLGLLLRLAILVLVVWLVVKVAKAAWNSGNHKPQPTEAVITQMPEKTPEATVIAAPPEETAPPSEAPQGGEK*
Ga0136247_10009878	Ga0136247_100098783	F032289	MRAWDITFLLIVIQASIGLVNGIGLFDQTYFATQNDSTTTYTIGDISDLHDVESGGEVSQMSYFDLAVTFGMAGINLLFKIIEAIVFIFPVLVDQFHIPLPLAAMLQSMIYLQVAWGYAQWKSNRSGRSTD*
Ga0136247_10010245	Ga0136247_100102452	F074887	MHYEVVWPSGDLLGIFPTYPAALQRARVYWERGYACRIRKRVCSLAPSALTMSAAVKKIRRGEE*
Ga0136247_10014960	Ga0136247_100149603	F033769	MSTVNCGIKTATNTPTTVGVATGRKYLRLTNESLDMRCRAGDASISNEAGIIIEPGQTVEFRPLPSDNTDIYVMSEGKPVKLAYYEVIA*
Ga0136247_10015375	Ga0136247_100153751	F025938	KQFIIGDTLIEIVNATGDKGGTIAYLAGKLGVSASTLYDYYRIAKLWTPEYRAMYQALDWTIYRNADPNDPEDRALLEKCIDEGWNATKFKEQKYPALQDPGAILGKMMAMGKRLYEQDNLEIEQREAILNALNILEEIAREIEVAFV*
Ga0136247_10018833	Ga0136247_100188332	F080199	MMKVKVYGVAELNQKLDQIVAAVQENVDNTIDLFTSDMTKEVKDSAPYDTGRYMSSWYYERVEPMTYAIISRNSDVHYNIYLVYGVSKFKPIAFEPRYKYADSERGIIHDIRQIKFIYSIKFAQLIKRTNLLSAGFAMAGL*
Ga0136247_10018833	Ga0136247_100188333	F088950	MDIDGVLKELAAFIEEKVPELESKVTTIYPESNRFESPSVVIDIVSGREHLIIDGAKQYELVRIAIVSDRKSEINRIFKLITDAFLKYGRELTTGIYRGISYVSPVAPAFIEKNGVLKRELDIEIIEFMKVN*
Ga0136247_10019990	Ga0136247_100199901	F037711	AAAPACKRTTLSQQIDAKKRTGFGAGRGQDEGKLKFLASKIWV*
Ga0136247_10021894	Ga0136247_100218943	F047964	MEEMMTSKKEMAIILNKIGSVFGKEVDEKLVSVYHLALKNYPRMALADAAMLCVQENNFMPRPSELVEKIERYDLERKWQVVEPSTERTYWVLFREEYESTDDISEAECREIFGKEYVGAPKTKKVTNQNNEQRLIEFRKLYKEQKWNSK*
Ga0136247_10025666	Ga0136247_100256662	F041512	MEKDYRLIRDLDAYVRVRAKKDTTITLKLKAKIAQMSGEELDIAEAYYHQLLAADIRTLGEIGCIELAVELAVELAAWLYPRILREAYAERSKDYMLAQ*
Ga0136247_10025814	Ga0136247_100258142	F022442	MTFIPAGEARLDLYTDAMLLDIGPDTFVVPLDRLADLTAHRRREVVVSRRYWGDAPGTFRDVEQGLRLRRSQTGRSLMLIEQGRVYSIPVYLVLEVKDGIRESCTISMLVTDARQLDDAHSRQTVLEVWA*
Ga0136247_10025878	Ga0136247_100258781	F027161	MVMNEYIKLILENLNISYVCSVMLIGYIFTKSKLISKLKIQKRWLILLIGLLVAVFYYFVIKINLDILFFSFITAQFLNLYVAEFIIDYFIKKIKKLTEKS*
Ga0136247_10028427	Ga0136247_100284271	F021489	MERKGAKMTIEKKIESVQEYNLLKLLKANSDLKRFGVEWIKLDHNLCRAFATNAYALIIADLEPNQWHDIFDGLPEVIFIDKLKRDEVHYFEAKELVYYNYRTVFEAVGKEPNYQPVMHLDLKLLRNLTDKFDDVYFVKQSGLALFMKLEGDKYPAGSYYGALMPKSITQEETAKIIEALSSLATDGDIRRQWVADWN
Ga0136247_10028520	Ga0136247_100285201	F047964	YPRMALADAAMLCVQENSFMPRPKDLVEKIDKYDLERKWQVVEPSTERTYWVLFREEYESTDDISEVECREIFGEEYVGAQKAYQSQKKVMREDNEERLKKFRKLYQESKNVPQN*
Ga0136247_10032261	Ga0136247_100322612	F082560	MSEKAIVRKLQEWFKERGGVCHKVHGGPMSSGFPDLIGCIDGKTWLIEVKVPNAKPRVPKATREKLPLEMQRWMEAGATVMQAKTLYDWMMAGAVCMVATSVKDVEDRYYNEKEDN*
Ga0136247_10040464	Ga0136247_100404643	F090426	EGDRGHAPLPGHEEGSVMVTWKQVIERYGEEMAEKMIATGLLDAITCVMLPSGEADIPECDIARALRAVRGLPVHDWD*
Ga0136247_10040559	Ga0136247_100405592	F037711	ACKRTTLSQQIDAKKRTAFGAGRGQGEGRLKFLTLKNLDVIE*
Ga0136247_10044007	Ga0136247_100440072	F049316	MDKEKRITTIVLDKEADRKSKIIAEFTGKTLSAIYREALDEYFDRFVDKQLYLAINNYFAKLYFQYDIGTPEIYNIIMSGKLADAAVMIAEAVKQLPQEPEAQKLIDEGMRLISILSK*
Ga0136247_10045448	Ga0136247_100454481	F049316	MDKDKRITTIVLDKEADRKSKIIAEFTGKTLSAIYREALDMYFSHFVNNDLLSKVNEFSDKLYWQYKIDNPHIFTAVQFGNLSNAAVMIAEAVKQLPQEPEAQKLIDEGMRLISILSK*
Ga0136247_10045448	Ga0136247_100454482	F021262	CSYIQKTKGAKMSKKYYIKFTTGKELTGTAKEIVTQLRNESRLLAITPRNYAKLVAKSYEMSTGLKLRTWTYNSFVKSLGKSLMIMEFKEVK*
Ga0136247_10046856	Ga0136247_100468562	F031475	MDANTSDSSQDSLNANPQKQYEKLTQLDFLTLEMMGISLEELRALLDEEELQAYFAFLRRQSSDLDSTGP*
Ga0136247_10048200	Ga0136247_100482002	F024321	MMLEEILKLIAGMAGLGAFTSMLINLLKAVGLVKDGQADKAFKVADLIVFVIVTVIYLTKTPVDWARVDEWLILLAALLGYVVSVFSGEFTHNTIKGTPVIGYSYSEKKPKG*
Ga0136247_10048813	Ga0136247_100488131	F055749	MNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPSLDAGSEWNATNNPDLPSGASMWSQLGPLLVLAVLAMVIGLVIMYFRNAAG*
Ga0136247_10049622	Ga0136247_100496222	F037272	MKPKQIIRVHAVSGDKDVVADRVTIENDEYILLYGDEEVRRIPIADTISGIDPETGEWVSELESIFSCT*
Ga0136247_10049962	Ga0136247_100499621	F024321	MLEEVLAIIAGMAGLGAFVSMLINLLKAIGLIQDGQADKAFKVADLIVFVAVMVVYLVKVQVDWTQVNEWLVLLTALLGYVVSVFSGEFTHDTIKGTPLIGYSYSEKKLNK*
Ga0136247_10067156	Ga0136247_100671561	F037711	GAAAPACKRTTLSQQIDAEKRTGFGAGRGQGEGRLKFFTLKIWM*