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Sample 3300010231
3300010231: Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil ? week5, replicate 1
Overview
| Basic Information |
| IMG/M Taxon OID | 3300010231 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0121424 | Gp0154110 | Ga0136216 |
| Sample Name | Soil microbial communities from Bangor area, North Wales, UK enriched with cashew seed oil ? week5, replicate 1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Fidelity Systems Inc |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 187358437 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Hanamia → Hanamia caeni | 1 |
| Not Available | 3 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil |
| Type | Engineered |
| Taxonomy | Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil → Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information |
| Location | Bangor area, North Wales, UK |
| Coordinates | Lat. (o) | 53.24 | Long. (o) | -4.01 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F051903 | Metagenome / Metatranscriptome | 143 | Y |
| F069475 | Metagenome / Metatranscriptome | 124 | Y |
| F097545 | Metagenome / Metatranscriptome | 104 | N |
| F098280 | Metagenome | 104 | N |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0136216_1046755 | Ga0136216_10467552 | F098280 | PNTLKPVVEQVARDFYQNFNSIKGDTINQSEETIEFASRIAPADAISTSITKYLQPYSYTWEATMFKTENYEEAVEKYKIYYRQLNGSKLTYYDKTSYNLSGRYDAXXXRYDAPDEARAFASSILQLNPSNNNLQFFKVEIGLSYSLPEWTVKVMIYEKIADDKIRPTIEVPIR* |
| Ga0136216_1058706 | Ga0136216_10587061 | F069475 | XXXNAAIARVAAAARPLAAVLDQEQMQAASGLANEMGLGPVVAALR* |
| Ga0136216_1060147 | Ga0136216_10601471 | F051903 | VFLDETHKREGEVESYTIVLPGEPPYIESANTSSYATRYDMIAACSGAATLPPIIYSPSERERGATQAMLLQYVRNLLAQAAGALDVYPLVLLLDRSGIHNEQNLLQEFHDWGCQELTEVIRIPPASAKRLSPLDNSLFNVWRQRVLAEGGLNKMNIRRRMSNAWNSITTADIQAQYRSCGLTRGQDVYFDCPDCDRPLS |
| Ga0136216_1067180 | Ga0136216_10671801 | F097545 | QLGHVSGSDGTTTLSDARAMTVTLGDVTLWVGPGGALNDNGTATDVTDATTLSDDTVQAGDLGFSGHVDSMKLATLKDAGDPAVATDDVSYLALDISGLSASLVGLEDVLAFNAWDVGVLLNSASDSDGNATTTPGKLDWASFAVTDGIGLPGFNDDLNAGVDLSISGAATLNVLSGLA |
