3300010228: Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 2

Overview

Basic Information

• IMG/M Taxon OID: 3300010228
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121426 | Gp0154199 | Ga0136269
• Sample Name: Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Fidelity Systems Inc
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104504819
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Candidatus Sulfomarinibacteraceae → Candidatus Sulfomarinibacter → unclassified Candidatus Sulfomarinibacter → Candidatus Sulfomarinibacter sp. MAG AM1	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities Enriched With Nitrile Substrates
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Bangor, North Wales, UK
• Coordinates
  • Lat. (^o): 53.23
  • Long. (^o): -4.13
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036294	Metagenome / Metatranscriptome	170	Y
F064731	Metagenome	128	Y
F096595	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136269_1004125	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Candidatus Sulfomarinibacteraceae → Candidatus Sulfomarinibacter → unclassified Candidatus Sulfomarinibacter → Candidatus Sulfomarinibacter sp. MAG AM1	1778
Ga0136269_1011031	Not Available	962
Ga0136269_1015157	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	836

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136269_1004125	Ga0136269_10041251	F064731	MSSFRRVALFLSILAFVAPFSPAADFEADTNGPWINVDVIDLADYGDATYLDYLGEGYVAMLDALMSEEMILDYGVMMKTTGSTSDGDVVVWWSVKSLADYEKALERMGTLAGELWTEGELAELWPKLEKVRTIKSSNLXXXXLYRAVLWNKVAE*
Ga0136269_1011031	Ga0136269_10110311	F096595	MDSIIKFGQYVKHIRTKKGMTQFQLSQKVFDKPNYEYIGKLERGELEGITFGTVDKILTALDSEMGFSQFETYVADSYQ*
Ga0136269_1015157	Ga0136269_10151572	F036294	VVVTDRGSADEAVVGVKPIAVEDVVTPLRVKLSESDKDVGAEGRNM*