3300010219: Soil microbial communities from Bangor area, North Wales, UK, before enrichment, after WGA

Overview

Basic Information

• IMG/M Taxon OID: 3300010219
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121424 | Gp0154114 | Ga0136220
• Sample Name: Soil microbial communities from Bangor area, North Wales, UK, before enrichment, after WGA
• Sequencing Status: Permanent Draft
• Sequencing Center: Fidelity Systems Inc
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74944429
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4
All Organisms → cellular organisms → Bacteria	3
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. RG327	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil → Soil Microbial Communities From Bangor Area, North Wales, Uk Enriched With Cashew Seed Oil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Bangor area, North Wales, UK
• Coordinates
  • Lat. (^o): 53.24
  • Long. (^o): -4.01
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003319	Metagenome / Metatranscriptome	494	Y
F004294	Metagenome / Metatranscriptome	445	Y
F018331	Metagenome / Metatranscriptome	235	Y
F026664	Metagenome / Metatranscriptome	197	Y
F031283	Metagenome / Metatranscriptome	183	Y
F048593	Metagenome	148	Y
F051312	Metagenome / Metatranscriptome	144	Y
F052858	Metagenome / Metatranscriptome	142	Y
F077733	Metagenome / Metatranscriptome	117	Y
F078325	Metagenome / Metatranscriptome	116	N
F092504	Metagenome	107	Y
F097271	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136220_1001643	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3802
Ga0136220_1002101	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3214
Ga0136220_1009807	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1111
Ga0136220_1009920	All Organisms → cellular organisms → Bacteria	1103
Ga0136220_1010703	Not Available	1052
Ga0136220_1012016	All Organisms → cellular organisms → Bacteria	993
Ga0136220_1014050	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	925
Ga0136220_1018024	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	838
Ga0136220_1020667	All Organisms → cellular organisms → Bacteria	789
Ga0136220_1022868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. RG327	742

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136220_1001643	Ga0136220_10016431	F018331	MTSRTGLEAEAILRLTDGAQPAAIRAILVQCLAGEVAPSAAISRMLGMENAATVRAAIDDVTHRAATISRAGDTLVRDRVDELTQIFVEMVADLADVSDATKRS
Ga0136220_1002101	Ga0136220_10021013	F031283	MEPSGTQFLKDVTVTQLFDATQLSGAPLRSTIYAAYIADDSISLSGSVPAIEIEPSKTIFSATAPNVPEAQVWIIRHFSRYMLASG*
Ga0136220_1003865	Ga0136220_10038653	F077733	MTKPSRYTIALLPFLLGGCFFATKSDVDKLQADMIGTRAGANAADSVQRAYLVDLSRNMRSLNDSISALSRRMNAMKTASDADLAAIREDDSQLQDLSGQSQRQLRDM
Ga0136220_1009807	Ga0136220_10098072	F048593	XGAEDRMLHAEMLRELGEISRAVGNAGAARSAWREAVDSFNVIGASQEIAEVEQQLQSLG
Ga0136220_1009807	Ga0136220_10098073	F097271	MTNRPTVELKAVESSAVRESIDRAKQAEREGRWAEACSIYEALVRDPAAHASTRLAALRWLGRAYLEQGNRGAALDVLEAAVASADIIGSPPAVAQA
Ga0136220_1009920	Ga0136220_10099202	F003319	XXXXLQHVPQDLGGAEAGRRAAETGTVKEKRALVFFAGVSAALIVVATVILRTYFRTVAQHDAMLVSAGLAFAVQLGSYALLRPARSGHGVPGELLIRWALGAGLRLFVLVLYAPLARIGNLSLEAALVSLVTFFFLTMMAEPLLLEYDR*
Ga0136220_1010703	Ga0136220_10107031	F051312	MTATRSILAAMVLGAAISVNQAGAQCSGNAGSCNLTNTASVSVNALVKLAMSSATTTLTSPTA
Ga0136220_1012016	Ga0136220_10120161	F092504	ANPGTYAVVRDIKSGRMVVRGPGGGGCDCDEDFNHARWFSPDSFEIAVAHRNTTGTWERFPGKASVARVHVDTLTDEPDWH*
Ga0136220_1014050	Ga0136220_10140502	F026664	XXXQPVSEPATAIGTLSPAVATVAPSPAKPSALINIKIADSRSSTIGPRDALQYTFELPETDQKCRLVGSTKGVGGFGRNIEVFLLTDDEYVFWHANPAAIANSSWETFRGSENTLSYDLPGAGVYHFIVSN
Ga0136220_1018024	Ga0136220_10180242	F078325	XEGLEDRLLQAELLREFGQTSRALGNSADARLAWSEAAESFEDVGAQHEAAEINALLSSLPS*
Ga0136220_1020667	Ga0136220_10206672	F004294	SRAEVMRLEFGEQPPPEICLPDKPLADIEDNAIHKAIQDAPYIIYRRYHLAHESWRLGIVYSIAPPTVGDIQILXXXXXXXX
Ga0136220_1022868	Ga0136220_10228682	F052858	MQRIGDIIHRRRDSDDFSEGDHREYVESGVRDILLIGGATLLFIGAFVVSLV*