3300010057: Continental margin sediment microbial communities from China - WA_23_40 metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300010057
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120351 | Gp0146716 | Ga0126365
• Sample Name: Continental margin sediment microbial communities from China - WA_23_40 metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 472563
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Continental Margin Sediment Microbial Communities From Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Continental Margin Sediment → Continental Margin Sediment Microbial Communities From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → continental margin → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: China: Qiqihar, Heilongjiang
• Coordinates
  • Lat. (^o): 47.5233
  • Long. (^o): 125.0078
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013050	Metagenome / Metatranscriptome	275	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0126365_10878	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	2004

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0126365_10878	Ga0126365_108781	F013050	MSKGKQPRTRVKVPKLLLSEIKDVFFKNNQEIGLEAAIF*