3300009986: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_92 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300009986
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114297 | Gp0127580 | Ga0105033
• Sample Name: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_92 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38332961
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: USA: Austin, Texas
• Coordinates
  • Lat. (^o): 30.387
  • Long. (^o): -97.7301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000199	Metagenome / Metatranscriptome	1639	Y
F000492	Metagenome / Metatranscriptome	1078	Y
F007426	Metagenome / Metatranscriptome	351	Y
F026874	Metagenome / Metatranscriptome	196	Y
F032552	Metagenome / Metatranscriptome	179	Y
F061504	Metagenome / Metatranscriptome	131	N
F065178	Metagenome	128	Y
F068797	Metagenome / Metatranscriptome	124	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105033_103757	All Organisms → cellular organisms → Bacteria	1286
Ga0105033_105451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1094
Ga0105033_112170	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	762
Ga0105033_117131	Not Available	652
Ga0105033_119033	Not Available	622
Ga0105033_124016	Not Available	559
Ga0105033_126494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105033_103757	Ga0105033_1037573	F065178	MRRAAYVISAASVLFTLTVHAQEGKRPLIPDRPSYRSDRPSAPTVTEALKALGAITVGDVRSMSDRDLRQLTDLLKQWIDIVGIEERRRNDRPDGKGRIPLSKD*
Ga0105033_105451	Ga0105033_1054511	F026874	MQMLLFTVLGAAVMVIAYAFGVPGPVCGLLFLGGVFTGALLRVAQPIIDWITRP*
Ga0105033_112170	Ga0105033_1121701	F032552	VIVGLAISCSKIGQKPAKMKYLQNICANVKTTNNWAEVRMVSDFDIKFMPLSKLNRG*
Ga0105033_112170	Ga0105033_1121702	F061504	FEEKDRMENPSLNISLLCLAPKYLDLILWALSFGLHWRVDVHEWASNHHGLRSFVRALAFVILRVIA*
Ga0105033_117131	Ga0105033_1171311	F000492	MNVGAKQGELVQLLQKFVPRSHIGIFRNENNQSTPLDPI
Ga0105033_119033	Ga0105033_1190332	F068797	MGQMTPPSSDEPAGISHEEARQELFGRGPSRAGLAAYEIIVIVIAIVGAAIAFEEIDHWSQWVVLGGIIFALIGFMIALSPNREE*
Ga0105033_124016	Ga0105033_1240161	F000199	VHSGPLGCLTKLGAKWAELVQKFVPRSRIGIIRNERARSTPFDPKLMFWCILNHLGAFGTVWFPYETRGKTGRTSAKVRVNKVASEF
Ga0105033_126494	Ga0105033_1264941	F007426	VNMTHVVLSIPAIVIATIVVGIPFNRLLGGTRTALERLVIALVSIPATVVLAVALFTFNALVPDLYAELLRFADWIWQASLNALSAWGDSLPGVRKLANAARQGFSGHHYVIMALCSMLASFIVNALFVSLSASGR*