Metagenome / Metatranscriptome Family F068797

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068797
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	81 residues
Representative Sequence	MALPGSDEPASISQDEARQELFGRGPSKAGMEIYEVIAIVLGIVGAAIAFEEIDNWSQWVVLAAIIVTVIGFMIAVSPNRRDG
Number of Associated Samples	92
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.20 %
% of genes near scaffold ends (potentially truncated)	41.13 %
% of genes from short scaffolds (< 2000 bps)	84.68 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.806 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.161 % of family members)
Environment Ontology (ENVO)	Unclassified (27.419 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.645 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.25% β-sheet: 0.00% Coil/Unstructured: 47.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF01416	PseudoU_synth_1	29.84
PF01196	Ribosomal_L17	13.71
PF03118	RNA_pol_A_CTD	4.03
PF00416	Ribosomal_S13	2.42
PF00411	Ribosomal_S11	0.81
PF14520	HHH_5	0.81
PF03239	FTR1	0.81
PF01653	DNA_ligase_aden	0.81
PF02535	Zip	0.81
PF00884	Sulfatase	0.81
PF13829	DUF4191	0.81
PF12441	CopG_antitoxin	0.81
PF02518	HATPase_c	0.81
PF00753	Lactamase_B	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0101	tRNA U38,U39,U40 pseudouridine synthase TruA	Translation, ribosomal structure and biogenesis [J]	29.84
COG0203	Ribosomal protein L17	Translation, ribosomal structure and biogenesis [J]	13.71
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	4.03
COG0099	Ribosomal protein S13	Translation, ribosomal structure and biogenesis [J]	2.42
COG0100	Ribosomal protein S11	Translation, ribosomal structure and biogenesis [J]	0.81
COG0272	NAD-dependent DNA ligase	Replication, recombination and repair [L]	0.81
COG0428	Zinc transporter ZupT	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.81 %
Unclassified	root	N/A	49.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.81 %
Unclassified	root	N/A	49.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.81 %
Unclassified	root	N/A	49.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.74 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.19 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	42.74 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.42 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.19 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	12.10 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.42 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.19 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	10.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.42 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.81 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.81 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.42 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.61 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.81 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.81 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.42 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.61 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.81 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.81 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.42 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.61 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.81 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.81 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908036\|A5_v_NODE_16964_len_5334_cov_7_798838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5384	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0470346	Not Available	511	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101606112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2286	Open in IMG/M
3300000890\|JGI11643J12802_12335213	Not Available	812	Open in IMG/M
3300000955\|JGI1027J12803_101589912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	799	Open in IMG/M
3300000956\|JGI10216J12902_109323999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1517	Open in IMG/M
3300000956\|JGI10216J12902_109643861	Not Available	1480	Open in IMG/M
3300001305\|C688J14111_10229787	Not Available	579	Open in IMG/M
3300001686\|C688J18823_10021508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	4342	Open in IMG/M
3300001686\|C688J18823_10386947	Not Available	906	Open in IMG/M
3300002568\|C688J35102_118134964	Not Available	532	Open in IMG/M
3300002568\|C688J35102_119780007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300002568\|C688J35102_119887068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	804	Open in IMG/M
3300002568\|C688J35102_120035606	Not Available	854	Open in IMG/M
3300002568\|C688J35102_120233668	Not Available	940	Open in IMG/M
3300002568\|C688J35102_120634299	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300003659\|JGI25404J52841_10113474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	570	Open in IMG/M
3300003990\|Ga0055455_10008191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2239	Open in IMG/M
3300003990\|Ga0055455_10077296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	953	Open in IMG/M
3300003990\|Ga0055455_10078459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	947	Open in IMG/M
3300004006\|Ga0055453_10077639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	950	Open in IMG/M
3300004081\|Ga0063454_100868720	Not Available	708	Open in IMG/M
3300004081\|Ga0063454_101465906	Not Available	582	Open in IMG/M
3300004114\|Ga0062593_101949033	Not Available	651	Open in IMG/M
3300004153\|Ga0063455_100309990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	872	Open in IMG/M
3300004156\|Ga0062589_101262794	Not Available	711	Open in IMG/M
3300004157\|Ga0062590_100101888	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300005093\|Ga0062594_101581886	Not Available	678	Open in IMG/M
3300005162\|Ga0066814_10026858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	839	Open in IMG/M
3300005162\|Ga0066814_10045670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	706	Open in IMG/M
3300005164\|Ga0066815_10025809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	852	Open in IMG/M
3300005165\|Ga0066869_10013341	Not Available	1155	Open in IMG/M
3300005168\|Ga0066809_10098208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	713	Open in IMG/M
3300005332\|Ga0066388_100536905	All Organisms → cellular organisms → Bacteria	1801	Open in IMG/M
3300005332\|Ga0066388_103149323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	843	Open in IMG/M
3300005332\|Ga0066388_103637092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	787	Open in IMG/M
3300005332\|Ga0066388_105110574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300005445\|Ga0070708_100720606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	938	Open in IMG/M
3300005713\|Ga0066905_100427663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1082	Open in IMG/M
3300005713\|Ga0066905_100635415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	908	Open in IMG/M
3300005764\|Ga0066903_100125568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3586	Open in IMG/M
3300005764\|Ga0066903_100729872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1754	Open in IMG/M
3300005937\|Ga0081455_10027389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	5223	Open in IMG/M
3300005937\|Ga0081455_10034602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4525	Open in IMG/M
3300005983\|Ga0081540_1149656	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300006048\|Ga0075363_101051522	Not Available	503	Open in IMG/M
3300006051\|Ga0075364_11073926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300006578\|Ga0074059_11251075	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300006581\|Ga0074048_10093942	Not Available	505	Open in IMG/M
3300006605\|Ga0074057_10954845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300006845\|Ga0075421_101341083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	790	Open in IMG/M
3300009098\|Ga0105245_10016675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6414	Open in IMG/M
3300009837\|Ga0105058_1173703	Not Available	531	Open in IMG/M
3300009986\|Ga0105033_119033	Not Available	622	Open in IMG/M
3300010036\|Ga0126305_10788392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	645	Open in IMG/M
3300010037\|Ga0126304_10828611	Not Available	628	Open in IMG/M
3300010154\|Ga0127503_10381690	Not Available	1089	Open in IMG/M
3300010154\|Ga0127503_11027410	Not Available	612	Open in IMG/M
3300010399\|Ga0134127_12490118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	597	Open in IMG/M
3300011000\|Ga0138513_100020824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	903	Open in IMG/M
3300012212\|Ga0150985_108807483	Not Available	644	Open in IMG/M
3300012212\|Ga0150985_114464985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3819	Open in IMG/M
3300012212\|Ga0150985_117356330	Not Available	872	Open in IMG/M
3300012350\|Ga0137372_11014061	Not Available	578	Open in IMG/M
3300012355\|Ga0137369_10091997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2512	Open in IMG/M
3300012355\|Ga0137369_10360428	Not Available	1059	Open in IMG/M
3300012360\|Ga0137375_10116362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2683	Open in IMG/M
3300012360\|Ga0137375_10296278	Not Available	1465	Open in IMG/M
3300012360\|Ga0137375_10945057	Not Available	682	Open in IMG/M
3300012469\|Ga0150984_112211891	Not Available	730	Open in IMG/M
3300012505\|Ga0157339_1038778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	589	Open in IMG/M
3300012902\|Ga0157291_10360703	Not Available	525	Open in IMG/M
3300012924\|Ga0137413_10200540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1341	Open in IMG/M
3300012929\|Ga0137404_11703551	Not Available	585	Open in IMG/M
3300012930\|Ga0137407_12411286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300015200\|Ga0173480_11067669	Not Available	536	Open in IMG/M
3300015201\|Ga0173478_10535113	Not Available	594	Open in IMG/M
3300015242\|Ga0137412_10720323	Not Available	741	Open in IMG/M
3300018064\|Ga0187773_10636711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	657	Open in IMG/M
3300018076\|Ga0184609_10002875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5763	Open in IMG/M
3300018433\|Ga0066667_10782852	Not Available	809	Open in IMG/M
3300019361\|Ga0173482_10527817	Not Available	579	Open in IMG/M
3300019881\|Ga0193707_1018445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2322	Open in IMG/M
3300019887\|Ga0193729_1222836	Not Available	624	Open in IMG/M
3300020140\|Ga0179590_1032730	Not Available	1286	Open in IMG/M
3300022756\|Ga0222622_10658069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	759	Open in IMG/M
3300024288\|Ga0179589_10031004	All Organisms → cellular organisms → Bacteria	1877	Open in IMG/M
3300025552\|Ga0210142_1006924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2060	Open in IMG/M
3300025552\|Ga0210142_1007533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1980	Open in IMG/M
3300025922\|Ga0207646_11041037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	722	Open in IMG/M
3300025927\|Ga0207687_10019335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4512	Open in IMG/M
3300025932\|Ga0207690_11872690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	501	Open in IMG/M
3300027560\|Ga0207981_1002529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3269	Open in IMG/M
3300027909\|Ga0209382_11323368	Not Available	729	Open in IMG/M
3300028720\|Ga0307317_10091832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1002	Open in IMG/M
3300028755\|Ga0307316_10345784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300028768\|Ga0307280_10340007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300028768\|Ga0307280_10376476	Not Available	527	Open in IMG/M
3300028784\|Ga0307282_10542084	Not Available	565	Open in IMG/M
3300028791\|Ga0307290_10371817	Not Available	523	Open in IMG/M
3300028793\|Ga0307299_10419725	Not Available	501	Open in IMG/M
3300028810\|Ga0307294_10290993	Not Available	590	Open in IMG/M
3300028811\|Ga0307292_10168423	Not Available	891	Open in IMG/M
3300028814\|Ga0307302_10085716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1495	Open in IMG/M
3300028819\|Ga0307296_10103298	Not Available	1529	Open in IMG/M
3300028819\|Ga0307296_10761570	Not Available	528	Open in IMG/M
3300028819\|Ga0307296_10794790	Not Available	516	Open in IMG/M
3300028824\|Ga0307310_10216173	Not Available	910	Open in IMG/M
3300028828\|Ga0307312_10302010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1043	Open in IMG/M
3300028828\|Ga0307312_10737607	Not Available	653	Open in IMG/M
3300031093\|Ga0308197_10151669	Not Available	745	Open in IMG/M
3300031093\|Ga0308197_10437224	Not Available	521	Open in IMG/M
3300031094\|Ga0308199_1087798	Not Available	667	Open in IMG/M
3300031229\|Ga0299913_10664960	Not Available	1021	Open in IMG/M
3300031229\|Ga0299913_11624558	Not Available	597	Open in IMG/M
3300031231\|Ga0170824_101023841	Not Available	756	Open in IMG/M
3300031446\|Ga0170820_14522493	Not Available	638	Open in IMG/M
3300031446\|Ga0170820_16985971	Not Available	739	Open in IMG/M
3300032159\|Ga0268251_10402398	Not Available	593	Open in IMG/M
3300033433\|Ga0326726_10119921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2374	Open in IMG/M
3300034090\|Ga0326723_0624210	Not Available	500	Open in IMG/M
3300034251\|Ga0334947_144705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	507	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.68%
Host-Associated	Host-Associated	15.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.61%
Plants	Host-Associated → Plants	15.32%
Aquatic	Environmental → Aquatic	8.06%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.65%
Marine	Environmental → Aquatic → Marine	4.84%
Freshwater	Environmental → Aquatic → Freshwater	1.61%
Sediment	Environmental → Aquatic → Sediment	1.61%
Peat	Environmental → Terrestrial → Peat	1.61%
Roots	Host-Associated → Plants → Roots	1.61%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.81%
Phylloplane	Host-Associated → Plants → Phylloplane	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.84%
Loam	Environmental → Terrestrial → Soil → Loam	17.74%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.23%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.61%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%
Sand	Environmental → Terrestrial → Soil → Sand	0.81%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.52%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	9.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.65%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.03%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.23%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.61%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.61%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.61%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.81%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.16%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.68%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	9.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.23%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.23%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.42%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.61%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.61%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.81%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.81%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.81%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.81%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908036	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300009986	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_92 metaG	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034251	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 43SMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A5_v_00289080	2124908036	Soil	MALPGSDEPASISQDEARQELFGRGPSKAGMEIYEVIAIVLGIVGAAIAFEEIDNWSQWVVLAAIIVTVIGFMIAVSPNRRDG
ICChiseqgaiiDRAFT_04703462	3300000033	Soil	MALPGSDEPESISQEEARQELFGRGPSRVGMEVYEVVAIVLGLIGAAIAFDEIDNWSQWVVLAAIIATVLGVIIALNPSRRE*
INPhiseqgaiiFebDRAFT_1016061122	3300000364	Soil	MALPGSDEPASISHDEARQELFGHGPSKVGMEIYEMIAIILGIVGAAIAVDMIDSWSQWVVLAAIVVTVIGFMIAVNPHRRGX*
JGI11643J12802_123352131	3300000890	Soil	PESISQEEARQELFGRGPSRVGMEVYEVVAIVLGLIGAAIAFDEIDNWSQWVVLAAIIATVLGVIIA
JGI1027J12803_1015899122	3300000955	Soil	MALPGSDEPASISHDEARQELFGHGPSKVGMEIYEMIAIILGIVGAAIAVDMIDSWSQWVVLAAIVVTVIGFMIAVNPHRRGD*
JGI10216J12902_1093239993	3300000956	Soil	MALPGSDEPASISQDEARQELFGHGPSKVGMEIYEVLAIIVGIIGAAIAFDSIDNWSQWVVLAAIIVTVIGFMIAVNPHRRG*
JGI10216J12902_1096438613	3300000956	Soil	MALPGSDEPASISQDEARQELFGRGPSKVGMEVYEIVAIALGILGAGIAVEEIDSWAQWVVLAAIVMTVIGFMIAVSPNRRE*
C688J14111_102297872	3300001305	Soil	RTVATDRRDYPGMAMPGSDEPASISHDEARQELFGHGPSKVGMEVYEVIAIVLGIVGAAIAVESIDNWSQWVVLAAIVVTVIGFMIAVNPHRRDG*
C688J18823_100215082	3300001686	Soil	MPGSDEPASISHDEARQELFGHGPSKVGMEVYEVIAIVLGIVGAAIAVESIDNWSQWVVLAAIVVTVIGFMIAVNPHRRDG*
C688J18823_103869471	3300001686	Soil	MALPGSDEPASISHDEARQELFGHGPSKIGMEIYEVLAIVLGIVGAAVAIEAIDSWSQWVVLAAIVVTVIGFMIAVNPXRRDG*
C688J35102_1181349641	3300002568	Soil	FMRTVVTDGRHYPAMALPGSDEPASISHDEARQELFGHGPSKIGMEIYEVLAIVVGMIGAAIAVETIDSWSQWVVLAAIIVTVIGFMIAVNPHRRDG*
C688J35102_1197800072	3300002568	Soil	MALPGSDEPASISHDEARQELFGHGPSKVGMEVYEVIAIVLGIVGAAVAVEAIDSWSQWVVLAAIVATVIGFMIAVSPHREG*
C688J35102_1198870682	3300002568	Soil	MALPGSDEPASISHEEGRQELFGRGPSKVGMEVYEVIAIVLGMVGAGIAFETIDNWSQWVVLAAIIGTVIGFMIAVSPTRRDG*
C688J35102_1200356062	3300002568	Soil	MRTVATDRRHYPGMAMPGSDEPASISHDEARQELFGHGPSKVGMEVYEVIAIVLGIVGAAIAVESIDNWSQWVVLAAIVVTVIGFMIAVNPHRRDG*
C688J35102_1202336683	3300002568	Soil	MALPGSDEPASISQDEARQELFGHGPSKIGMEIYEVIAIIVGIIGAAIAFDRIDNWSQWVVLAAIIATVIGFMIAVSPHRRG*
C688J35102_1206342992	3300002568	Soil	MALPGSDEPASISQDEARQELFGHGPSKVGMEVYEVIAIIIGIVGAAIAVDSIDNWSQWVVLAAIVVTVIGFMIAVNPHRRGD*
JGI25404J52841_101134741	3300003659	Tabebuia Heterophylla Rhizosphere	MALPGSDEPDSISQDEARQELFGRGPSRVGMEVYEVVAIVLGIVGAAIAVESIDNWSQWLVLAAILATVLGVIIALNPNRRE*
Ga0055455_100081913	3300003990	Natural And Restored Wetlands	MALPGSDEPSSISHEEARQELFGHGPSKAGLAAYEIVVLILGMVGAAIAFDQIDNWSQWVVLGAIIATVIGFMIAVSPNRRGD*
Ga0055455_100772961	3300003990	Natural And Restored Wetlands	MALPGSDEPASISHEEARQELFGHGPSKAGLAAYEIIVLVLGMVGAGIAFDQIDNWSQWVVLAAIIATVIGFMIAVSPNRRGG*
Ga0055455_100784591	3300003990	Natural And Restored Wetlands	MALPGSDEPASISQDEARQELFGRGPSKVGMEVYEVIAIVLGIVGAAIAFETIDNWSQWVVLAAIIGTVIGFMIAVSPSRRG*
Ga0055453_100776392	3300004006	Natural And Restored Wetlands	MALPGSDEPSSISHEEARQELFGHGPSRAGLAAYEIIVLILGMLGAAIAFDQIDNWSQWVVLGGIIVVVIGFMIAVSPNRRGA*
Ga0063454_1008687201	3300004081	Soil	MALPGSDEPASISHDEARQELFGHGPSKIGMEIYEVLAIVLGIVGAAVAIEAIDSWSQWVVLAAIVVTVIGFMIAVNPHRRDG*
Ga0063454_1014659061	3300004081	Soil	GSDEPASISQDEARQELFGHGPSKIGMEIYEVLAIVVGMIGAAIAVETIDSWSQWVVLAAIIVTVIGFMIAVNPHRRDG*
Ga0062593_1019490331	3300004114	Soil	MALPGSDEPESISQEEGRQELFGRGPSKVGMEVYEVVAIVLGIIGAAIAFEEIDNWSQWVVLAGIVATVIGLIIALNPNRRE*
Ga0063455_1003099902	3300004153	Soil	MALPGSDEPASISHEEGRQELFGRGPSKVGMEVYEVVAIVLGMVGAGIAFETIDNWSQWVVLAAIIGTVIGFMIAVSPTRRDG*
Ga0062589_1012627941	3300004156	Soil	RWPCPARTKPESISQEEGRQELFGRGPSKVGMEVYEVVAIVLGIIGAAIAFEEIDNWSQWVVLAGIVATVIGLIIALNPNRRE*
Ga0062590_1001018881	3300004157	Soil	MPLPGSDEPASISQDEARQELFGRGPSKVGMEVYEVVAIVLGIVGAGIAVETIDSWAQWVVLAGIVVTVIGFMIAVNPNRRE*
Ga0062594_1015818862	3300005093	Soil	MTPPMADEPPGMELEESRQELFGRGPSKVGMEVYELVVVVLAIVGAAIAFETIDSWSQWVVLAAIIGTLIGFMIAVSPDRRA
Ga0066814_100268581	3300005162	Soil	MALPGSDEPASISQDEARQELFGRGPSKVGMEVYEVIAIVLGIGGAAIAVETIANWSQWVVLAAIIATVIGFMI
Ga0066814_100456703	3300005162	Soil	DEPASISQDEARQELFGHGPSKVGMEVYEVIAIVLGIGGAAVAVKTIDSWAQWVVLAAIVVTVIGFMIAVSPNRRGD*
Ga0066815_100258091	3300005164	Soil	MALPGSDEPASISQDEARQELFGRGPSKVGMEVYEVIAIVLGIGGAAVAVKTIDSWAQWVVLAAIVVTVIGFMIAVSPNRRGD*
Ga0066869_100133413	3300005165	Soil	MALPGSDEPASISQDEGRQELFGHGPSKVGMEVYEVIAIVLGIIGAAIAFDSIDNWSQWVVLAAIIVTVIGFMIAVNPHRRDG*
Ga0066809_100982083	3300005168	Soil	PSKVGMEVYEVIAIVLGIGGAAVAVKTIDSWAQWVVLAAIVVTVIGFMIAVSPNRRGD*
Ga0066388_1005369051	3300005332	Tropical Forest Soil	VGEVEPDLRHPVRPFARVVTVARHYPAMALPDSDEPESISHEEARQELFGRGPSRVGMELYEVIAIVLAIISAAIAFDEIDNWSQWLVLAAIIAAVIGLIIALNPNRRE*
Ga0066388_1031493232	3300005332	Tropical Forest Soil	MALPGSDEPTSISHDEARQELFGRGPSKVGMEVYEVIAIILGIVGAAIAVQTIDSWAQWVVLGAIIVTVIGFMIAVSPNRRDG*
Ga0066388_1036370922	3300005332	Tropical Forest Soil	MALPGSDEPSSISNEEARQELFGRGPSKVGMEIYEVIAIVVGIVGAAIAFEMIDSWAQWVVLAGIIITVIGFMIAVSPNRSE*
Ga0066388_1051105742	3300005332	Tropical Forest Soil	MALPGSDEPSSISHEESRQELFGHGPSRAGLAIYEVIAIVVAIVGGAVAFETIDNWSQWVVLGAIIATLIGFMVAVSPNRRA*
Ga0070708_1007206062	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MALPGSDEPASISQDEARQELFGHGPSKVGMEVYEVIAIVLGIIGAAIAVDSIDSWSQWVVLAAIVVTVIGFMIAVNPHRRGG*
Ga0066905_1004276633	3300005713	Tropical Forest Soil	ARVVTVARHYPAMALPGSDEPESISQEEARQELFGRGPSRVGMELYEVIAIVLGIIGAAIAFDEIDNWSQWVVLAAIIATVIGVIIALNPDRRE*
Ga0066905_1006354153	3300005713	Tropical Forest Soil	PGAPSSRCATLPRVEFPGSDEPPEISQAEARQELFGRGPSKVGLEIYEVLAIIVAIIGAAIAVEEIDSWAQWAVLGGIIITLIGFMIAVSPNREA*
Ga0066903_1001255683	3300005764	Tropical Forest Soil	MPLPGSDEPSSISQDEARQELFGRGPSKVGMEVYEVIAIIVGIIGAGIAVSTIDSWAQWVVLAAIIITVIGFMIAVSPNREE*
Ga0066903_1007298723	3300005764	Tropical Forest Soil	VALPGSDEPASISHDEARQELFGHGPSKIGMEIYEVIAIILGIVGAAVAVNSIDSWAQWVVLGAIVVTVIGFMIAVNPHRRDG*
Ga0081455_100273895	3300005937	Tabebuia Heterophylla Rhizosphere	MALPGSDEPESISQDEARQELFGRGPSKVGMEVYEVAAIILGIIGAAIAFETIDNWSQWVVLGAIIVTVIGFMIAVSPNREE*
Ga0081455_100346023	3300005937	Tabebuia Heterophylla Rhizosphere	MALPGSDEPASISHDEARQELFGRGPSKVGMEVYEVIAIIVGIVGAAIAFETIDSWAQWVVLAGILVCVIGFMIAVSPNRRGD*
Ga0081540_11496561	3300005983	Tabebuia Heterophylla Rhizosphere	EEARQELFGRGPSKVGMEVYEVLAIIVGIVGAAIAFETIDSWAQWVVLGGILVTVLGMIIALNPNRRE*
Ga0075363_1010515222	3300006048	Populus Endosphere	MRTVVTSARHYPAMALPGSDEPASISQDEARQELFGRGPSKVGMEVYEVIAIVLGIVGAAIAFETIDSWAQWVVLAGILVTVIGFMIAVSPNRRDG*
Ga0075364_110739262	3300006051	Populus Endosphere	MALPGSDEPASISHDEARQELFGRGPSKVGMEVYEVIAIVLGIVGAAIAFETIDSWAQWVVLGGILV
Ga0074059_112510752	3300006578	Soil	MALPGSDEPASISQDEARQELFGHGPSKVGMEVYEVIAIVLGIIGAAIAVDSIDNWSQWVVLAAIVVTVIGFMIAVNPHRRDG*
Ga0074048_100939421	3300006581	Soil	SQDEARQELFGRGPSKVGMEVYEVVAIVLGIVGAGIAVETIDSWAQWVVLAGIVVTVIGFMIAVNPNRRE*
Ga0074057_109548452	3300006605	Soil	MALPGSDEPASISQDEARQELFGRGPSKVGMEVYEVIAIVLGIGGAAVAVKTIDSWAQWVVLAAIVVTVIGFMIA
Ga0075421_1013410831	3300006845	Populus Rhizosphere	MALPGSDEPASISQDEARQELFGHGPSKVGMEIYEVVAIIVGIIGAAIAFDRIDNWSQWVVLAAIIATVIGFMIAVSPHRRG*
Ga0105245_100166753	3300009098	Miscanthus Rhizosphere	MPLPGSDEPASISHDEARQELFGHGPSKVGMEIYEVIAIIVGIVGAGIAVSMIDSWAQWVVLGAIVVTVIGFMIAVSPHREQ*
Ga0105058_11737031	3300009837	Groundwater Sand	EPASISHEAARQELFGRGPSKTGMEIYEIVTIALGIVGAAIAFEEIENSWQWAVLAGIIVTVLGLLIAVSPNRRD*
Ga0105033_1190332	3300009986	Switchgrass Rhizosphere	MGQMTPPSSDEPAGISHEEARQELFGRGPSRAGLAAYEIIVIVIAIVGAAIAFEEIDHWSQWVVLGGIIFALIGFMIALSPNREE*
Ga0126305_107883921	3300010036	Serpentine Soil	MALPGSDEPASISNDEARQELFGHGPSKVGMEIYEVLAIVVGIIGAAVAIEAIDSWSQWVVLGAIIVTVIGFMIAVNPHRRDG*
Ga0126304_108286112	3300010037	Serpentine Soil	DEPASISNDEARQELFGHGPSKVGMEIYEVLAIVVGIIGAAVAIEAIDSWSQWVVLGAIIVTVIGFMIAVNPHRRDG*
Ga0127503_103816901	3300010154	Soil	PASISQDEARQELFGRGPSKVGMEVYEVVAIVLGIVGAGIAVETIDSWAQWVVLAGIVVTVIGFMIAVNPNRRE*
Ga0127503_110274102	3300010154	Soil	DEPESISQDEARQELFGRGPSRVGMEIYEVVAIVVGIIGAAIAVEEIDNWSQWVVLAAIIITVIGFMIAVSPNRPE*
Ga0134127_124901182	3300010399	Terrestrial Soil	MPLPGSDEPASISQDEARQELFGRGPSKVGMEIYEVVAIVLGIVGAGIAVSTIDSWAQWVVLAGIIVTVIGFMIAVNPNRRE*
Ga0138513_1000208241	3300011000	Soil	MALPGSDEPESISHDEARQELFGRGPSRVGMEVYEVVAIVLGIVGGAIAFEEIDNWSQWVVLAGIIATVIGFMIAVSPNRPG*
Ga0150985_1088074832	3300012212	Avena Fatua Rhizosphere	DEPASISHEEGRQELFGRGPSKVGMEVYEVVAIVLGMVGAGIAFETIDNWSQWVVLAAIIGTVIGFMIAVSPTRRDG*
Ga0150985_1144649851	3300012212	Avena Fatua Rhizosphere	PASISHDEARQELFGHGPSKVGMEVYEVIAIVLGIVGAAIAVESIDNWSQWVVLAAIVVTVIGFMIAVNPHRRDG*
Ga0150985_1173563301	3300012212	Avena Fatua Rhizosphere	PGSDEPESISHEEARQELFGRGPSRVGMEVYEVIAIVLGMIGAAIAFEEIDNWSQWVVLAGIIATVIGFMIAVSPNREE*
Ga0137372_110140612	3300012350	Vadose Zone Soil	MALPGSDEPAAISQDEARQELFGRGPSKAGMEIYEVVAIVLGIVGAAIAFEEIDNWSQWVVLAAIIGTVIGFMIAVSPNRRGT*
Ga0137369_100919974	3300012355	Vadose Zone Soil	MPLPGSDEPGSISQEEARQELFGRGPSKTGMEIYEVIAIVLGLVGAGIAFDEIDNWSQWVVLVAIIVIVIGLIIALNPNRPRA*
Ga0137369_103604283	3300012355	Vadose Zone Soil	AMALPGSDEPSSISHEEARQELFGHGPGRAGLAAYEIIVLILGMVGAAIAFDQIDNWSQWVVLAAIIATVIGFMIAVSPNRRGD*
Ga0137375_101163623	3300012360	Vadose Zone Soil	MALPGSDEPSSISHEEARQELFGHGPSRAGLAAYEIIVLILGMVGAAIAFDQIDNWSQWVVLAAIIATVIGFMIAVSPNRRGD*
Ga0137375_102962782	3300012360	Vadose Zone Soil	MPLPGSDEPGSISQEEARQELFGRGPSKTGMEIYEVIAIVLGLVGAGIAFDEIDNWSQWVVLVAIIVIVIGLMIALNPNRPRA*
Ga0137375_109450572	3300012360	Vadose Zone Soil	MALPGSDEPASISHDEARQELFGHGPSKAGMEIYEVVAIVLGIVGAAIAFEEIDNWSQWVVLAAIIGTVIGFMIAVSPNRRGG*
Ga0150984_1122118911	3300012469	Avena Fatua Rhizosphere	DEPASISHDEARQELFGHGPSKIGMEIYEVLAIVLGIVGAAVAIEAIDSWSQWVVLAAIVVTVIGFMIAVNPHRRDG*
Ga0157339_10387781	3300012505	Arabidopsis Rhizosphere	MALPGSDEPESISQEEARQELFGRGPSRVGMEVYEVVAIILGVVGAAIAFETIDSWAQWVVLAGILVT
Ga0157291_103607031	3300012902	Soil	MPLPGSDEPASISQDEARQELFGRGPSKVGMEVYEVVAIVLGIVGAGIAVETIDSWAQWVVLAGIIVT
Ga0137413_102005402	3300012924	Vadose Zone Soil	MALPGSDEPASISQDEARQELFGRGPSKVGMEVYEVIAIVLGFIGAAVAIEEIDNWSQWVVLAAIIATVIGFMIAVSPNRRDG*
Ga0137404_117035512	3300012929	Vadose Zone Soil	MALPGSDDPVSISHDEARQELFGHGPSKVGMEVYEVIAIVLGIIGAAIAVDSIDNWSQWVVLAAIVVTVIGFMIAVNPHRRDG*
Ga0137407_124112861	3300012930	Vadose Zone Soil	MALPGSDEPASISQDEARQELFGRGPSKVGMEVYEVIAIVLGIAGAAIAFETIDNWSQWVVLAAIVVTVIGFMIAVNPHRRDG*
Ga0173480_110676691	3300015200	Soil	FGRGPSKVGMEVYEVVAIVLGIVGAGIAVETIDSWAQWVVLAGIVVTVIGFMIAVNPNRRE*
Ga0173478_105351131	3300015201	Soil	LPGSDEPASISQDEARQELFGRGPCKVGMEVYEVVAIVLGIVGAGIAVETIDSWAQWVVLAGIVVTVIGFMIAVNPNRRE*
Ga0137412_107203232	3300015242	Vadose Zone Soil	MPLPGSDEPASISQDEARQELFGRGPSKVGMEVYEVIAIVLGIAGAAIAFDTIDNWTQWLVLAAIIGTVIGFMIAVSPNRRG*
Ga0132257_1014541601	3300015373	Arabidopsis Rhizosphere	LFGRGPSRVGMEVYEVVAIILGVVGAAIAFETIDSWAQWVVLAGILVTVLGVIIALNPDRRE*
Ga0187773_106367112	3300018064	Tropical Peatland	MPLPGSDEPSSISHDEARQELFGRGPSKVGMEVYEVIAIILGIVGGAIAVSTINSWARWVVLAVIVVTVIG
Ga0184609_1000287510	3300018076	Groundwater Sediment	MALPGSDEPASISHEEARQELFGRGPSKTGMEIYEIVTIVLGIVGAAIAFEEIENSWQWAVLAGIIVTVLGLLIAVSPNRRG
Ga0066667_107828522	3300018433	Grasslands Soil	MALPGSDEPASISQDEARQELFGHGPSKIGMEIYEVLAIVVGMIGAAIAVDTIDSWSQWVVLAAIIVTVIGFMIAVNPHRRDG
Ga0173482_105278172	3300019361	Soil	MPLPGSDEPASISQDEARQELFGRGPSKVGMEVYEVVAIVLGIVGAGIAVETIDSWAQWVVLAGIVVTVIGFMIAVNPNRRE
Ga0193707_10184452	3300019881	Soil	MALPGSDEPASISQDEARQELFGHGPSKAGMEIYEVIAIVLGIVGAAVAFEEIDNWSQWVVLAAIIGTVIGFMIAVNPNRRGG
Ga0193729_12228361	3300019887	Soil	ARFTRTVVISARHYSAMALPGSDEPASISQDEARQELFGHGPSKAGMEIYEVIAIVLGIVGAAIAFEEIDNWSQWVVLAAIIGTVIGFMIAVNPNRRGG
Ga0179590_10327304	3300020140	Vadose Zone Soil	TGPVVGDVHPHGRHKRATLPPMPLPGSHEPESLSEEEVESISQEEARQELFGRGPSKTGMEIYEIVAIVVGIVGAAVAFEEIDNWSQWVVLAAIIVVVIGFMIAVNPNRRE
Ga0222622_106580692	3300022756	Groundwater Sediment	MPGSDEPASISNDEARQELFGHGPSKIGMEVYEVIAIVLGIVGAAIAVESIDSWSQWVVLAAIVVTVIGFMIAVNPHRRDG
Ga0179589_100310042	3300024288	Vadose Zone Soil	MPLPGSHEPESLSEEEVESISQEEARQELFGRGPSKTGMEIYEIVAIVVGIVGAAVAFEEIDNWSQWVVLAAIIVVVIGFMIAVNPNRRE
Ga0210142_10069243	3300025552	Natural And Restored Wetlands	MALPGSDEPASISHEEARQELFGHGPSKAGLAAYEIIVLVLGMVGAGIAFDQIDNWSQWVVLAAIIATVIGFMIAVSPNRRGG
Ga0210142_10075332	3300025552	Natural And Restored Wetlands	MALPGSDEPSSISHEEARQELFGHGPSKAGLAAYEIVVLILGMVGAAIAFDQIDNWSQWVVLGAIIATVIGFMIAVSPNRRGD
Ga0207646_110410372	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MALPGSDEPASISQDEARQELFGHGPSKVGMEVYEVIAIVLGIIGAAIAVDSIDNWSQWVVLAAIVVTVIGFMIAVNP
Ga0207687_100193352	3300025927	Miscanthus Rhizosphere	MPLPGSDEPASISHDEARQELFGHGPSKVGMEIYEVIAIIVGIVGAGIAVSMIDSWAQWVVLGAIVVTVIGFMIAVSPHREQ
Ga0207690_118726901	3300025932	Corn Rhizosphere	MPLPGSDEPASISHDEARQELFGHGPSKVGMEIYEVIAIIVGIVGAGIAVSMIDSWAQWVVLGAIVVTVIGFMIAV
Ga0207981_10025291	3300027560	Soil	RRHYPAMPLPGSDEPASISQDEARQELFGRGPSKVGMEVYEVVAIVLGIVGAGIAVETIDSWAQWVVLAGIVVTVIGFMIAVNPNRRE
Ga0209382_113233681	3300027909	Populus Rhizosphere	MALPGSDEPASISQDEARQELFGHGPSKVGMEIYEVVAIIVGIIGAAIAFDRIDNWSQWVVLAAIIATVIGFMIAVSPHRRG
Ga0307317_100918321	3300028720	Soil	MPLPGSDEPESISQDEARQELFGRGPSRLGMEIYEVIAIVVGIIGAAIAFEEIDNWSQWVVLAAIIVTVIGFMIAVSPNRPE
Ga0307316_103457841	3300028755	Soil	MALPGSDEPASISHDEARQELFGHGPSKVGMEVYEVVAIILGIVGAAIAVEEIDNWSQWVVLAAIIVTVIGFMIAVNPHRRGD
Ga0307280_103400071	3300028768	Soil	MALPGSDEPASISQDEARQELFGRGPSKVGMEVYEVGAIVLGIVGAAIAVETIDNWSQWVVLAAIVATVIGFMIAVSPNREG
Ga0307280_103764761	3300028768	Soil	EARQELFGHGPSKIGMEIYELLAIVLGIVGAAVAIEAIDSWSQWVVLAAIIVTVIGFMIAVNPHRRDG
Ga0307282_105420842	3300028784	Soil	MALPGSDEPASISQDEARQELFGHGPSKVGMEIYEVIAIIVGMVGAAIAVETIDNWSQWVVLAAIIVTVIGFMIAVNPHRRGD
Ga0307290_103718172	3300028791	Soil	MSSRVEGTGARHYSAMPLPGSDEPESISQDEARQELFGRGPSRLGMEIYEVIAIVVGIIGAAIAFEEIDNWSQWVVLAAIIVTVIGFMIAVSPNRPE
Ga0307299_104197251	3300028793	Soil	AMPGSDEPASISNDEARQELFGHGPSKIGMEVYEVIAIVLGIVGAAIAVESIDSWSQWVVLAAIVVTVIGFMIAVNPHRRDG
Ga0307294_102909932	3300028810	Soil	DEARQELFGHGPSKIGMEVYEVIAIVLGIVGAAIAVESIDSWSQWVVLAAIVVTVIGFMIAVNPHRRDG
Ga0307292_101684231	3300028811	Soil	MALLGSDEPASISHDEARQELFGHGPSKIGMEIYELLAIVLGIVGAAVAIEAIDSWSQWVVLAAIIV
Ga0307302_100857163	3300028814	Soil	HYPGMAMPGSDEPASISNDEARQELFGHGPSKIGMEVYEVIAIVLGIVGAAIAVESIDSWSQWVVLAAIVVTVIGFMIAVNPHRRDG
Ga0307296_101032983	3300028819	Soil	MALPGSDDPASISQDEARQELFGRGPSKVGMEVYEVGAIVLGIVGAAIAVETIDNWSQWVVLAAIVATVIGFMIAVSPNREG
Ga0307296_107615702	3300028819	Soil	HYPAMALPGSDEPASISHDEARQELFGHGPSKVGMEVYEVIAIIVGIVGAAIAVEEIDNWSQWVVLAAIIVTVIGFMIAVNPHRRGD
Ga0307296_107947902	3300028819	Soil	MALPGSDEPASISHDEARQELFGRGPSKVGMEVYEVIAIVLGIIGAAIAFEEIDNWSQWVVLAAIIGTVIGFMIAVSPNRRDG
Ga0307310_102161733	3300028824	Soil	PVMALLGSDEPASISHDEARQELFGHGPSKIGMEIYELLAIVLGIVGAAVAIEAIDSWSQWVVLAAIIVTVIGFMIAVNPHRRDG
Ga0307312_103020102	3300028828	Soil	MALPGSDEPASISQDEARQELFGRGPSKVGMEVYEVIAIVLGMIGAAIAFETIDNWSQWVVLAAIIGTVIGFMIAVSPNRRDG
Ga0307312_107376071	3300028828	Soil	PGSDEPASISHDEARQELFGHGPSKTGMEIYELLAIVLGIVGAAVAIEAIDSWSQWVVLAAIIVTVIGFMIAVNPHRRDG
Ga0308197_101516691	3300031093	Soil	SDEPASISQDEARQELFGRGPSKVGMEVYEVIAIVLGIIGAAIAFEEIDNWSQWVVLAAIIGTVIGFMIAVSPNRRDG
Ga0308197_104372241	3300031093	Soil	DEPASISNDEARQELFGHGPSKIGMEVYEVIAIVLGIVGAAIAVESIDSWSQWVVLAAIVVTVIGFMIAVNPHRRDG
Ga0308199_10877983	3300031094	Soil	SDEPASISQDEARQELFGRGPSKVGMEVYEVGAIVLGIVGAAIAVETIDNWSQWVVLAAIVATVIGFMIAVSPNREG
Ga0299913_106649603	3300031229	Soil	LTPRPSDEPGAISHEEARQEFLGRGPSRAGMAAYEIILIVIAIVGSAIAFEEIDHWSQWIVLGAIIFTLIGFMIALSPNRRGA
Ga0299913_116245581	3300031229	Soil	MPPPMADEPAGIEHDEARQELYGRGPSTAGLAIYEVIAIVLAIVGGAIAFEEID
Ga0170824_1010238413	3300031231	Forest Soil	RQELFGHGPSKVGMEVYEVIAIVLGIIGGAIAVDSIDNWSQWVVLAAIVVTVIGFMIAVNPHRRDG
Ga0170824_1063198814	3300031231	Forest Soil	GHGPSKVGMEVYEVIAIVLGIIGGAIAVDSIDNWSQWVVLAAIIVTVIGFMIAVNPHRRD
Ga0170820_145224932	3300031446	Forest Soil	QELFGHGPSKVGMEVYEVIAIVLGIIGAAIAVDSIDNWSQWVVLAAIIVTVIGFMIAVNPHRRDG
Ga0170820_169859713	3300031446	Forest Soil	GSNEPASISNEEARQELFGHGPSKVGMEVYEVIAIVLGIIGGAIAVDSIDNWSQWVVLAAIVVTVIGFMIAVNPHRRDG
Ga0268251_104023981	3300032159	Agave	MALPGSDEPASISHDEARQELFGRGPSKVGMEIYEVVAIVLGMVGAAIAFEEIDSWSQWVVLAAIIATVIGFMIAVNPNRRA
Ga0326726_101199212	3300033433	Peat Soil	MALPGSDEPASISQEEARQELFGHGPRRAGLAAYEIIVLILGMVGAAIAFDQIDNWSQWVVLGAIILTVIGFMIAVSPNRRGN
Ga0326723_0624210_157_447	3300034090	Peat Soil	MRTVATSARHYPAVALPGSDEPSAISHEEAREELFGRGPNRAGLAAYEIIVLILGMVGAAIAFDQIDNWSQWVVLAAIIVTVIGFMIAVSPNRRGD
Ga0334947_144705_185_424	3300034251	Sub-Biocrust Soil	MSDEPAGIGREEARQEMYGRGPGVGGMAAFEIVAIVVAMVGGAVAYEEIDNWSQWLVLGMIIVLLIGTMIALSPNRRGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068797

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences