3300009979: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300009979
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114297 | Gp0127579 | Ga0105032
• Sample Name: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32258315
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Austin, Texas
• Coordinates
  • Lat. (^o): 30.387
  • Long. (^o): -97.7301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000392	Metagenome / Metatranscriptome	1188	Y
F002059	Metagenome / Metatranscriptome	597	Y
F003605	Metagenome / Metatranscriptome	477	Y
F016911	Metagenome / Metatranscriptome	243	Y
F018870	Metagenome	232	Y
F024195	Metagenome / Metatranscriptome	207	Y
F029305	Metagenome / Metatranscriptome	188	Y
F042712	Metagenome / Metatranscriptome	157	Y
F088146	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105032_100091	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	9704
Ga0105032_100389	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4440
Ga0105032_112095	Not Available	691
Ga0105032_114274	Not Available	633
Ga0105032_115369	Not Available	607
Ga0105032_116184	Not Available	589
Ga0105032_118095	Not Available	553
Ga0105032_121218	Not Available	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105032_100091	Ga0105032_1000918	F024195	MGDRFFNVLGAIVTVALVTTIVSRPTSATVIKAMGDSFAGSIRAALGK*
Ga0105032_100389	Ga0105032_1003893	F003605	VAIGDAATAAGFAVVPDTGEEGRVRWGGREITRTRDYIANVKALVPVGKAGFRTAAGISSGTADPTGGSDGDIYFKIIS*
Ga0105032_112095	Ga0105032_1120951	F002059	VHSVPFGCLTKLGAKRAEGVQKFVPQSRVGIFRNERTRSTPLDPKMMFWCVLYHLGAFGAVWLSYETRCKTDRTSAKVRATKSRRNFSQRTRPIHPIGPQTDVLVRFVPFGYIRDRLVALRNSVQSWPNWCKSSCHEVASDFFATNTPDPPLWTLK*
Ga0105032_114274	Ga0105032_1142741	F042712	MEYLFDESGRQKFLQLLADRPALELIKTSQALLHRLGVGSDIKGVLGDLPRYARHVRGAPRKDVCVGAEKDDEDHFLFTV
Ga0105032_115369	Ga0105032_1153691	F029305	MEPNLMFWCISFRSGAFWTVSQLHETWCKMRQTGAINLKVRATMSCQNFSEQTLLI
Ga0105032_115369	Ga0105032_1153692	F088146	MSLGSNGMDRERSL*KIMTRLRGMNSYINCTSLAR
Ga0105032_116184	Ga0105032_1161842	F016911	VLKMPSPAGVLTVQGDRTAAVAAVERLHTLAAEAARSEEDPSTSQPRAPAKAPRVQRSGPDDVPVKTVQIGADSTRTTRIAGNLEEK*
Ga0105032_118095	Ga0105032_1180951	F018870	KPPRNLVLGLKEWIGHVRCEKTRRNFGSIMWCIVCAPKPDLTTGTSRQRNRAKPPRNLVLGLKKWIGHVRCEKARRNFGSTMWCILCTPKHDITTCTSRQWNRAKPPRNIVLGLKKWIGHVRCEKTRRNFGSIKRCIVCTPKPVLTTGTSRQRNRAKPPRNLVLGQKKWIGQDRSEKTRRNFGS
Ga0105032_121218	Ga0105032_1212181	F000392	L*AGGSVAPAQPTSLR*K*GIFAQTCSTHLEGPYRKDSSGAHPCRAIDWA*EPRIPSPCSLKAITLATGSKIGSSRSRWNRSTEYYPVGMKTHIEYADIFF*KYNSPYHIEMGSYVLIDLL*AGGSVAPAQPTSLR*NRGIFAQTCSTCLEGPYRKDSFCARPCRAID