3300009963: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 9

Overview

Basic Information

• IMG/M Taxon OID: 3300009963
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120337 | Gp0151215 | Ga0133749
• Sample Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 9
• Sequencing Status: Permanent Draft
• Sequencing Center: Autonomous University of Barcelona
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8332969
• Sequencing Scaffolds: 11
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
Not Available	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F049707	Metagenome	146	N
F051214	Metagenome	144	N
F053097	Metagenome / Metatranscriptome	141	Y
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F076191	Metagenome	118	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F103430	Metagenome	101	N
F105376	Metagenome	100	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0133749_10012	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44199
Ga0133749_10014	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43387
Ga0133749_10024	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	32548
Ga0133749_10040	Not Available	17821
Ga0133749_10185	Not Available	3465
Ga0133749_10595	All Organisms → Viruses → Predicted Viral	1796
Ga0133749_10842	Not Available	1524
Ga0133749_11699	Not Available	1036
Ga0133749_11796	Not Available	1002
Ga0133749_12384	All Organisms → Viruses	846
Ga0133749_14117	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	607

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0133749_10012	Ga0133749_1001210	F027205	MRAVKESEEFERKALVEAQKRDRAEGKKPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0133749_10012	Ga0133749_1001215	F071329	MRPLYSKGILMLPVARIVISGLSSIGTGMIASKLTKPLVSNANGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEASTHIEIED*
Ga0133749_10012	Ga0133749_1001224	F067847	MFSHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIKRYDNVTNFQEWMQSAIYAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQVKEDGKFAEVEEKIKEAELNSL*
Ga0133749_10014	Ga0133749_100148	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKAS*
Ga0133749_10024	Ga0133749_1002410	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNTTDLIEYQLKNGDSFIVTYDPIHRIIVMRAFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKKEWLA*
Ga0133749_10024	Ga0133749_1002414	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0133749_10024	Ga0133749_1002421	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVKEDPKYKELDDKLKETELNNL*
Ga0133749_10024	Ga0133749_100244	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQENILLKNIEEYEFIQYRPQKAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGMKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMYID*
Ga0133749_10024	Ga0133749_100245	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0133749_10040	Ga0133749_100408	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFATDEEKNKWNNKLNAPVPMQDHLANNQIGYDSINSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0133749_10185	Ga0133749_101855	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLNELKEVLDQEAIAYQIENDLQLI*
Ga0133749_10595	Ga0133749_105952	F053097	MFDIQGNRIKLSTEDLAIPPFKDYYNKAKDKSEALKEIEYVIWLYKWNTPYEAYPEKQRASVVAKDIFKDEKYIPSP*
Ga0133749_10842	Ga0133749_108422	F084362	MSLMNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSETDAEQKGFWWEK*
Ga0133749_11699	Ga0133749_116991	F076191	MKIIAESPAEIALMWRIKALSDELVNQDNRCTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDRHYDNPTTCIRSAHDNQELKDVIHLLILAGGNEIPSNHYGILRDA*
Ga0133749_11796	Ga0133749_117962	F105376	MNEKPEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLAQHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQSQVRRK*
Ga0133749_12384	Ga0133749_123842	F053097	FDIRGNKILLNTDDLAIPPFKNYYNEAKDKSSALKEIEYIVWLYKWNTPYEAYPENKRASVVGKDVFNDENYKPTEKVKELIKRF*
Ga0133749_14117	Ga0133749_141171	F084342	PNALCTSPHIVSAQCGAKLFLFGGYLAIPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*