3300009954: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 6

Overview

Basic Information

• IMG/M Taxon OID: 3300009954
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120337 | Gp0151212 | Ga0133740
• Sample Name: Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 6
• Sequencing Status: Permanent Draft
• Sequencing Center: Autonomous University of Barcelona
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5865750
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: Alicante,Spain
• Coordinates
  • Lat. (^o): 38.3852246
  • Long. (^o): -0.5132249
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054110	Metagenome	140	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0133740_10010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	33459
Ga0133740_10012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	29827
Ga0133740_10016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	23924

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0133740_10010	Ga0133740_1001035	F073671	MNKEHVEHELAELHEKERSLEKALELVREKIRELVNYTDKNKV*
Ga0133740_10010	Ga0133740_1001041	F067846	MSIIAEWERQEFNKWDKQCSKEDDYNRAVEMEIESIKEDIANGDDDAMCAFSEKMFDDDEFLKAIALGTDCEEMRIKILTAMAEDRLEQLEKDYKNGYILND*
Ga0133740_10012	Ga0133740_1001221	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVRTYKGGE*
Ga0133740_10016	Ga0133740_100163	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD*