Sample 3300009950

Basic Information
IMG/M Taxon OID	3300009950 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114530 \| Gp0149130 \| Ga0131848
Sample Name	Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 64 mira
Sequencing Status	Permanent Draft
Sequencing Center	Center for Advanced Technologies in Genomics, Sao Paulo University
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300009950 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114530 | Gp0149130 | Ga0131848

Sample Name

Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 64 mira

Sequencing Status

Permanent Draft

Sequencing Center

Center for Advanced Technologies in Genomics, Sao Paulo University

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	115845660
Sequencing Scaffolds	29
Novel Protein Genes	31
Associated Families	12

Dataset Contents

Total Genome Size

115845660

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	6
Not Available	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium

Ecosystem Assignment (GOLD)
Name	Compost Microbial Communities From Sao Paulo Zoo, Brazil
Type	Engineered
Taxonomy	Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Ecosystem Assignment (GOLD)

Name

Compost Microbial Communities From Sao Paulo Zoo, Brazil

Type

Engineered

Taxonomy

Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Sao Paulo Zoo, Brazil
Coordinates	Lat. (^o)	-23.651072	Long. (^o)	-46.620675	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Sao Paulo Zoo, Brazil

Coordinates

Lat. (^o)

-23.651072

Long. (^o)

-46.620675

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001417	Metagenome / Metatranscriptome	699	Y
F001784	Metagenome / Metatranscriptome	635	Y
F021612	Metagenome / Metatranscriptome	218	Y
F029085	Metagenome / Metatranscriptome	189	N
F035663	Metagenome / Metatranscriptome	171	Y
F047639	Metagenome / Metatranscriptome	149	Y
F059782	Metagenome	133	Y
F075995	Metagenome / Metatranscriptome	118	Y
F078430	Metagenome	116	N
F088555	Metagenome	109	N
F088752	Metagenome / Metatranscriptome	109	N
F098955	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0131848_1000997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	7769	Open in IMG/M
Ga0131848_1001089	All Organisms → cellular organisms → Bacteria	7302	Open in IMG/M
Ga0131848_1001542	All Organisms → cellular organisms → Bacteria → Proteobacteria	5667	Open in IMG/M
Ga0131848_1003033	Not Available	3455	Open in IMG/M
Ga0131848_1004271	Not Available	2762	Open in IMG/M
Ga0131848_1006266	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2208	Open in IMG/M
Ga0131848_1007497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1994	Open in IMG/M
Ga0131848_1010252	All Organisms → Viruses → Predicted Viral	1689	Open in IMG/M
Ga0131848_1012344	Not Available	1536	Open in IMG/M
Ga0131848_1012450	Not Available	1530	Open in IMG/M
Ga0131848_1017298	All Organisms → cellular organisms → Bacteria → Proteobacteria	1302	Open in IMG/M
Ga0131848_1018327	Not Available	1266	Open in IMG/M
Ga0131848_1019031	All Organisms → cellular organisms → Bacteria → Proteobacteria	1241	Open in IMG/M
Ga0131848_1021727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1165	Open in IMG/M
Ga0131848_1022843	All Organisms → Viruses → Predicted Viral	1138	Open in IMG/M
Ga0131848_1024998	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
Ga0131848_1026417	Not Available	1061	Open in IMG/M
Ga0131848_1029037	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
Ga0131848_1038606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	889	Open in IMG/M
Ga0131848_1048415	Not Available	800	Open in IMG/M
Ga0131848_1063615	Not Available	700	Open in IMG/M
Ga0131848_1066721	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
Ga0131848_1069639	Not Available	667	Open in IMG/M
Ga0131848_1071250	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	658	Open in IMG/M
Ga0131848_1083445	Not Available	594	Open in IMG/M
Ga0131848_1085937	All Organisms → cellular organisms → Bacteria → Proteobacteria	582	Open in IMG/M
Ga0131848_1089424	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
Ga0131848_1095907	Not Available	531	Open in IMG/M
Ga0131848_1099575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	510	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0131848_1000997	Ga0131848_10009973	F059782	VLGSDAVRIEFETARGRVIPGTGGQVATFFVALEIWSEQLTGPERAELTHRLSTRIMEAIAEEYGGEEIEIRRSRE*
Ga0131848_1001089	Ga0131848_10010893	F098955	MDSSAIPVFLAGPFPVLHTARVLHDEQEVELDVALLIGGMPTMLAATRFPLDETWERIQRALSSGDARLAVAGVPHEAQSITGAPEIHPSAYVGLECANGERLVLAHIKGPDRQQEAEGYARSVISAILEGRTPAELGELIED*
Ga0131848_1001542	Ga0131848_10015425	F035663	VELTDIHHALTAVHETVGTLTFPRCDQEXVYELIRRVELEIAGPHPDMQLIGTFLNSIARSLRTQPEAREACLRIEDAIERAGLPSTWQAGI*
Ga0131848_1003033	Ga0131848_10030331	F059782	VRGYVSGSDVVRVEFETARGRVIPGTGGQVATFFVALEIWSEQLTGPERAELTHRLSTRIMEAIAEEYGGEEIEIRRSRE*
Ga0131848_1004271	Ga0131848_10042715	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQGGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPTTEPTLRTDLRHHLQWLEAIAG*
Ga0131848_1006266	Ga0131848_10062663	F001784	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTXLPDDLSEGQLALVTDALKSAAHKGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*
Ga0131848_1007497	Ga0131848_10074972	F078430	MEGAALMATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQXVREVGVARNIERAVDGTPHVVGASQVGFVLDEGGGRITETMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131848_1010252	Ga0131848_10102523	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYXYSDNFQRTYSNVQITALNTDDDVQIHYALDQNGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131848_1012344	Ga0131848_10123441	F047639	TITYHLSSKFKPDFLINPDHIFIYNGYRTVIITDKSAETINPLXFNSKFNASDFKTAIESKLIKDTFSTLKHNTFDLTKFLLLLNIVITLGVFYFLLKSQGVI*
Ga0131848_1012344	Ga0131848_10123442	F029085	MKDIKNDKLXIXXLLEENIXEQLESGSSDLVSLIAISELTNLEKLKVITRLKDEQVPLLAKLYMXAETFNVPFXKNLADNILQLQISIRGLGRKELVNIVRESTPTETKRSLFGPKDVFR
Ga0131848_1012344	Ga0131848_10123443	F075995	MSKYRPLRKANVYITKNFKKVFYGMRTLYVKDHTGRVFIRYKNRYYQAYFDGYHTYHVRLK*
Ga0131848_1012450	Ga0131848_10124502	F059782	MRVEFNVARGRAVRGXGSQLATFSVLLDIESEQLSVMERAXLAQRLTARFAQAIAEEFGGEEIEIRRLRE*
Ga0131848_1017298	Ga0131848_10172982	F088555	MALRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYALDQNGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPTTEPTLRTDLRHHLXWLEAIAG*
Ga0131848_1018327	Ga0131848_10183272	F078430	VEGATLMATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQMVREVGIARSIERAVDGTPHVLGASQVSFVLDEGGGRTTTAMVYITAYRVARPLSLPQRREIELQLE
Ga0131848_1019031	Ga0131848_10190312	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYAPDQNGQPGTYQTTLQLPDGDYQTPVPVWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131848_1021727	Ga0131848_10217273	F088555	VSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVXIHYALDQGGQPGTYQTNLQLPDGDYQTPVPVXVKVTFAPXTEPTLRTDLRHHLQWLEAVKG*
Ga0131848_1022843	Ga0131848_10228434	F088555	MALRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYALDQNGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLRWLEAIAG*
Ga0131848_1024998	Ga0131848_10249982	F078430	MGRAALMATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQMVQEIGVARSIERAVDGTPHVVGASQVGFVLDEGGGQTTETAVYITAYRVVRPLSLPXRREIELQLEEA*
Ga0131848_1026417	Ga0131848_10264172	F088752	MKGLQSVYNQITNILKENNVLMNITPPRPYLIKKDDEERINREAESLLKEGKIKEYNSKIEEKEAYKLYFDEA*
Ga0131848_1029037	Ga0131848_10290372	F078430	MEGAALMATMLGGVVLPRVYVQESEPDWAGKLIRRWTLRTRPLTWEQYAAIEQMVREVGIARNIERAVDGTPHVLGASQVALILDEGGGRTTTAMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131848_1038606	Ga0131848_10386061	F047639	MRFLNKHKYLRVIKFNSDKSSTITYHLSSKFKPDFLINPDHIFIYNGYRTVIITDKSAETINPLDFNSKFNASDFKTAIESKLIKDTFSTLKHNTFDLTKFLLLLNIVITLGVFYFLLKSQGVI*
Ga0131848_1048415	Ga0131848_10484152	F059782	MRVEFETARGRVVQGKGSQVAVFLVALEVNSEQLSVPERAELTQRLTTRIAEIIADEFGGEEVELRRRHE*
Ga0131848_1063615	Ga0131848_10636152	F059782	MRVEFETARGRIVQGKGSQVAAFFVALEIESEQXTVPERGELLQRLTTRIVDAIAEEFGGEEIEVRRRE*
Ga0131848_1066721	Ga0131848_10667212	F088555	VSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYALDQGGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPTTEPTLRTDLRHHLQWLEAIAG*
Ga0131848_1069639	Ga0131848_10696392	F059782	VRGYVSGSDVVRVEFETARGRVIPGTGGQVATFFVALEIWSEQLTGPERAELTHRLSTRIMEAIAEEYGGEEIEVRRRHD*
Ga0131848_1071250	Ga0131848_10712501	F021612	MSVSGADRTRKLLTVGVGTVLIVVMGAVLIAGFRLATQMNANVAALQTASMLQTYPAALAQHLTSLRDRLEARAYAGQALADLRTTVAIEALDGRAQVGEGL
Ga0131848_1083445	Ga0131848_10834452	F075995	MSKYRPLRKANVYITKNFKKVFYGMRTLYVKDHTGRVFIRYKNRYYQAHFDGYHTYHVRLK*
Ga0131848_1085937	Ga0131848_10859372	F088555	GMAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYALDQNGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPATEPILRTDLRHWLQWLEAIAG*
Ga0131848_1089424	Ga0131848_10894241	F001417	MDGAQASAIHQALVSVQDAVTQMTFSSCDKDDVLELIERVENELHSPHPNLALMCTFLNSIARSLRAQPEAREACLAIEEAIEKAG
Ga0131848_1095907	Ga0131848_10959072	F078430	VQESEPDWAGKPIRRWTLRTRPLTWEQYASIEQMVXEVGVARSXERAVDGTPHVLGASQVALILXEGGGRTTTAMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131848_1099575	Ga0131848_10995751	F047639	STITYHLSSKFTPNFLINPDHIFIYNGYRTVIITDKSAETINPLDFESKFNAKDFETAIESKLIRDTFNTLKPKLFDMTTILLLLNLVMTFGVFYFLLKSQGVI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009950: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 64 mira

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences