3300009949: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 15 mira

Overview

Basic Information

• IMG/M Taxon OID: 3300009949
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114530 | Gp0149118 | Ga0131846
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 15 mira
• Sequencing Status: Permanent Draft
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 84449027
• Sequencing Scaffolds: 20
• Novel Protein Genes: 20
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae → Desulfallas → Desulfallas thermosapovorans	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Predicted Viral	1
Not Available	10
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012882	Metagenome / Metatranscriptome	276	Y
F024195	Metagenome / Metatranscriptome	207	Y
F036417	Metagenome / Metatranscriptome	170	Y
F059782	Metagenome	133	Y
F078430	Metagenome	116	N
F088555	Metagenome	109	N
F093744	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0131846_100261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	17241
Ga0131846_100729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae → Desulfallas → Desulfallas thermosapovorans	5170
Ga0131846_103065	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2320
Ga0131846_103351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2228
Ga0131846_103676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2139
Ga0131846_108218	All Organisms → Viruses → Predicted Viral	1515
Ga0131846_111666	Not Available	1304
Ga0131846_112072	All Organisms → cellular organisms → Bacteria → Proteobacteria	1284
Ga0131846_118582	Not Available	1055
Ga0131846_118791	Not Available	1048
Ga0131846_121575	Not Available	982
Ga0131846_122934	Not Available	954
Ga0131846_134218	Not Available	787
Ga0131846_135177	All Organisms → cellular organisms → Bacteria → Proteobacteria	776
Ga0131846_137210	All Organisms → cellular organisms → Bacteria	755
Ga0131846_142856	Not Available	704
Ga0131846_144331	Not Available	692
Ga0131846_150625	Not Available	645
Ga0131846_154835	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	617
Ga0131846_167914	Not Available	545

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0131846_100261	Ga0131846_1002619	F093744	MGFSVGDRVEVNYSVDDFPGHVGIVRDIKESTLLPGKTIVICYWPFLDKEIAFFEESFDLV*
Ga0131846_100729	Ga0131846_1007297	F088555	MAIRMYFDETVSLLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDDDVQIHYALDQNGQPGAYQTTLQLPDGDYKTPVPVWVKVTFSPVTEPILRTDLRHWLQWLEAIAG*
Ga0131846_103065	Ga0131846_1030653	F088555	MYFDETVSLLVRDDISPTLGSPDTYXGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQGGXPGTYQTNLQLPDGDYQTPVPVWVKVTFAPVTEPTLRTDLRHHLQWLEAVKG*
Ga0131846_103351	Ga0131846_1033516	F059782	VRVEFETARGRIVQGKGSQVAAFFVALEVESEQLTVPERGELLQRLTTRIVDAIAEEFGGEEIEVRRRHD*
Ga0131846_103676	Ga0131846_1036763	F088555	MYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDXDVQIHYALDQGGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPTTEPTLRTDLRHHLQWLEAIAG*
Ga0131846_108218	Ga0131846_1082184	F088555	MAIRMYFDETVSLLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQNGQPGTYQTNLQLPDGDYQTPVPIWVKVTFAPTTEPTLRTDLRHHLQWLEAIAG*
Ga0131846_111666	Ga0131846_1116664	F059782	MRVEFNVARGRAVRGKGSQLAAFSVLLDIESEQLSVMERAELAQRLTARFAQAIADEFGGEEIEVRRPRE*
Ga0131846_112072	Ga0131846_1120721	F012882	AASSCKQQPSLDALRXATETSCFKSADAVWVKLVVTTAPKGVGRDEFGPLDTQASVTVSR
Ga0131846_118582	Ga0131846_1185822	F059782	VRVEFETARGRVVPGKGSQVAAFFVALEVESEQLTVPERGELLQRLTTRIVDAIAEEFGGEEIEIRRRHE*
Ga0131846_118791	Ga0131846_1187912	F059782	MRVEFNVARGRAVRGXGSQLATFSVLLDIESEQLSVMERAELAQRLTARFAQAIADEFGGEEIEVRRPRE*
Ga0131846_121575	Ga0131846_1215751	F078430	MGRAALMATMLGGVVLPSVYVQEMEPDWVGKLIRRWTLRTRPLEWSEYQAIEQMVREVGVARNIERAVDGTPHALGASQVALILDEGGGRTTETMVYI
Ga0131846_122934	Ga0131846_1229341	F088555	MALRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQGGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131846_134218	Ga0131846_1342182	F078430	MGRATLMATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQMVREVGVARSIERAVDGTPHVLGASQVGFVLDEGGGQTTETVVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131846_135177	Ga0131846_1351772	F088555	MALRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQNGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131846_137210	Ga0131846_1372102	F059782	MRVEFETARGRVVPGKGSQVAAFFVALEVESEQLTVPERGELLQRLTTRIVDAIADEFGGEEVELRRRHE*
Ga0131846_142856	Ga0131846_1428562	F078430	VEGAALMATMLGGVVLPGVYVQEMEGEWAGKDIRRWVLRTRPITWEQFATIEEMVREVGVARSIERAVDGTPHVLGASQVALILDEGGGRTTTAMVYITAYRVVRPLSLPXRREIXLQLEEA*
Ga0131846_144331	Ga0131846_1443312	F078430	MGRATLMATMLGGVVLPRVYVQESEPDWAGKLIRRWTLRTRPLTWEQYAAIEQMVXEVGVARXXERAVXGTPXVLGASQVALILDEGGGRTTTAMVYXTAYRVVRPLSLPQRREIELQLEEA*
Ga0131846_150625	Ga0131846_1506252	F059782	MRVEFNVARGRAVQGRGSQLAAFSVLLDIESEQLSVMEXAELAQRLTVRFAQAIAEEFGGEEIEIRRSRE*
Ga0131846_154835	Ga0131846_1548352	F036417	MVYYARVPIRQLIPTVLVRLATDEGEVVFRARWNXSPLELQRSILFRLRQGTHLWFETEWGHSICFKPESVWGAVVDGR*
Ga0131846_167914	Ga0131846_1679144	F024195	MGDRLFNVLGAIVTVALVTTIVSRPTSAAVIRAMGDAFAGSIRAALGQ*