3300009948: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 30 mira

Overview

Basic Information

• IMG/M Taxon OID: 3300009948
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114530 | Gp0149122 | Ga0131847
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 30 mira
• Sequencing Status: Permanent Draft
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 65120098
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012882	Metagenome / Metatranscriptome	276	Y
F018909	Metagenome / Metatranscriptome	232	Y
F024195	Metagenome / Metatranscriptome	207	Y
F059782	Metagenome	133	Y
F078430	Metagenome	116	N
F088555	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0131847_105209	All Organisms → Viruses → Predicted Viral	1701
Ga0131847_109193	Not Available	1310
Ga0131847_109498	Not Available	1292
Ga0131847_113782	Not Available	1079
Ga0131847_117392	All Organisms → cellular organisms → Bacteria → Proteobacteria	964
Ga0131847_132430	Not Available	713
Ga0131847_140591	Not Available	634
Ga0131847_148958	Not Available	566
Ga0131847_154257	Not Available	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0131847_105209	Ga0131847_1052092	F088555	MALRMYFDETVSSIVRDDISPTLGSPDTYEGPAEGGSVERKLYLYXDNFQRTYSNVQITALNTDDDVQIHYALDQNGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131847_109193	Ga0131847_1091933	F059782	VRVEFETARGRIVQGXGSQVXAFSVLLDIESEQLSVMERAXLAQRLTVRFAQAIAEXXGGEEIEIRRSRE*
Ga0131847_109498	Ga0131847_1094982	F059782	VRVEFETARGRVVPXKGSQVAAFFVALEVHSEQLSVPERAELTQRLTTRIAEIIADEFGGEEXEXRRRHE*
Ga0131847_113782	Ga0131847_1137823	F059782	VRVEFETARGRIVQGKGSQVAAFSVLLDIESEQLSVMERAELAQRLTVRFAQAIAXEFGGEEIXXRRSRE*
Ga0131847_117392	Ga0131847_1173922	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDDDVQIHYALDQNGQPGAYQTTLQLPDGDYKTPVPVWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131847_132430	Ga0131847_1324301	F078430	MEGAALMATMLGGVALPSVYVQEMEPDWVGKLIRRWTLRTRPLTWEQFEAIEGLVREVGIARNIERAVDGTPHALGASQVALILDEGGGRTTTAMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131847_140591	Ga0131847_1405911	F018909	LRWVKTAIGAVIAISVIPIIAQTVAELTGAGGALEGTVAATLLDLAPLVFVAGVLAYLFTVTGDRRRN*
Ga0131847_148958	Ga0131847_1489581	F012882	ALRKATETSFYKAPDAGCVKLVIPTAPKGVGRDEFGPLDSQTSIVVRR*
Ga0131847_154257	Ga0131847_1542572	F024195	MGDRLFNVLGAIVTVALVTTIVSRPTXAAVIRAMGDAFAGSIRAALGQ*