3300009946: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 03 mira

Overview

Basic Information

• IMG/M Taxon OID: 3300009946
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114530 | Gp0149116 | Ga0131844
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 03 mira
• Sequencing Status: Permanent Draft
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 77991053
• Sequencing Scaffolds: 20
• Novel Protein Genes: 20
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059782	Metagenome	133	Y
F078430	Metagenome	116	N
F088555	Metagenome	109	N
F098955	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0131844_100414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13632
Ga0131844_100572	All Organisms → cellular organisms → Bacteria	11062
Ga0131844_100781	All Organisms → cellular organisms → Bacteria	9181
Ga0131844_101745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5251
Ga0131844_103998	Not Available	2660
Ga0131844_106189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1819
Ga0131844_107661	All Organisms → Viruses → Predicted Viral	1561
Ga0131844_107864	Not Available	1532
Ga0131844_108891	Not Available	1411
Ga0131844_109254	Not Available	1378
Ga0131844_109921	All Organisms → Viruses → Predicted Viral	1320
Ga0131844_111922	Not Available	1183
Ga0131844_113141	Not Available	1120
Ga0131844_116692	Not Available	995
Ga0131844_119930	All Organisms → cellular organisms → Bacteria	914
Ga0131844_134300	Not Available	703
Ga0131844_136910	Not Available	678
Ga0131844_144579	Not Available	609
Ga0131844_144639	All Organisms → cellular organisms → Bacteria	608
Ga0131844_149347	Not Available	571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0131844_100414	Ga0131844_1004145	F059782	VRVEFETARGRIVQGKGSQVVAFSVLLDIESEQLSVMERAELAQRLTVRFAQAIAEEFGGEEIEIRRSRE*
Ga0131844_100572	Ga0131844_10057216	F078430	VEGAALMATMLGGVVLPRVYVQESEPDWAGKLIRRWTLRTRPLTWEQYAAIEQMVREVGVARSIERAVDGTPHVLGASQVGFVLDEGGGQTTETAVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131844_100781	Ga0131844_1007819	F078430	MEGATLMATMLGGVALPSVYVQEMEPDWVGKLIRRWTLRTRPLTWEQYAAIEQMVREVGVARSIERAVDGTPHVLGASQVGFVLDEGGGQTTETAVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131844_101745	Ga0131844_1017453	F088555	MYFDETVSLLXRDDISPTLGSPDTYXGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDDDVQIHYALDQNGQPGAYQTTLQLPDGDYKTPVPVWVKVTFSPVTEPILRTDLRHWLQWLEAIAG*
Ga0131844_103998	Ga0131844_1039982	F078430	MEGAALMATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQMVREVGVARFIERAVDGTPHVLGASQVALILDEGGGRTTTAMVYITAYRVVRPLSLPQRREIELQL
Ga0131844_106189	Ga0131844_1061892	F078430	MLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQMVRTVGVARTIERAVDGTPHVVGASQVALVLDEGGGRVTTAXVYITSFRVSRPLSLPDRREVELELEEA*
Ga0131844_107661	Ga0131844_1076611	F088555	MYXXETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNXDADVQIHYALDQNGQPGTYQTTXQLPDGDYQTPVPIWVKVTFAPATEPTLRTDLRHWLQWLEAIAG*
Ga0131844_107864	Ga0131844_1078642	F078430	MEGAALMATMLGGVALPSVYVQEMEPDWVGKLIRRWTLRTRPLTWSEYQAIEQMVREVGVARSIERAVDGTPHVVGASQVGFVLDEGGGRTTTAMVYITAYRVVRPLSLPERREIELQLEEV*
Ga0131844_108891	Ga0131844_1088913	F059782	VLGSDDVRVEFETARGRVIPGXGGQVATFFVALEIWSEQLTGPERAELTHRLSTRIMEAIAEEYGGEEIEIRRSRE*
Ga0131844_109254	Ga0131844_1092541	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSXNFQRTYSNVQISALNXDAXVQIHYALDQNGQPGTYQTNLXLPDGDYRTPVPIWVKVTFAPATEPTLRTDLRHXLQWLEAIAG*
Ga0131844_109921	Ga0131844_1099212	F088555	MYFDETVSRLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQGGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPVTEPTLRTDLRHHLQWLEAVKG*
Ga0131844_111922	Ga0131844_1119221	F059782	VRVEFETARGRVVPGKGSXVAAFFVALEXESEQXTVPERGELLQRLTTRIVDAIADEFGGEEVELRRRHE*
Ga0131844_113141	Ga0131844_1131413	F059782	VRVEFEMARGRIVQGKGSQVAAFSVLLDIESEQLSVMERAELAQRLTVRFAQAIAEEFGGEEIEIRRSRE*
Ga0131844_116692	Ga0131844_1166922	F059782	VRVEFETARGRVVPGKGSQVAAFFVSLEVHSEQLSVPERAELTQRLTTRITEVIAEEFGGEEIEIRRRHE*
Ga0131844_119930	Ga0131844_1199302	F078430	MGRAALMATMLGGVVLPRVYVQESEPDWAGKLIRRWTLRTRPLTWEQFEAIEGLVREVGIARNIERAVDGTPHVLGASQVGFVLDEGGGQTTETAVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131844_134300	Ga0131844_1343002	F059782	VRVEFETARGRVVPGKGSQVAAFFVALEVESEQLTVPERGELLQRLTTRIVDAIADEFGGEEVELRRRHE*
Ga0131844_136910	Ga0131844_1369102	F059782	ARGRAVRGKGSQLATFSVLLDIESEQLSVMERAELAQRLTARFAQAIAEEFGGEEIEIRRLRE*
Ga0131844_144579	Ga0131844_1445792	F059782	VRVEFETARGRIVQGKGSQVAAFFVALEIESEQLTVPERGELLQRLTTRIVDAIAEEFGGEEIEVRRXE*
Ga0131844_144639	Ga0131844_1446391	F098955	MDSSAIPVFLAGPFPVLHTARVLHDEQEVELDVALLIGGMPTMLAATRFPLDETWERIQRALSSGDARLAVAGVPHEAQSITGAPEIYPXAYVGLECANGERLVLAHIKGPDRQQEAEGYARSVISAILEGRTPAELGELIED*
Ga0131844_149347	Ga0131844_1493471	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQITALNTDDDVQIHYALDQNGQPGTYQTTXQLPDGDXQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*