3300009917: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 8m depth; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009917
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0151167 | Ga0132239
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 8m depth; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29885096
• Sequencing Scaffolds: 9
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F015858	Metagenome / Metatranscriptome	251	Y
F025879	Metagenome / Metatranscriptome	200	Y
F025994	Metagenome / Metatranscriptome	199	Y
F029761	Metagenome / Metatranscriptome	187	Y
F042640	Metagenome / Metatranscriptome	158	N
F058819	Metagenome / Metatranscriptome	134	N
F073267	Metagenome / Metatranscriptome	120	Y
F073276	Metagenome / Metatranscriptome	120	N
F076034	Metagenome / Metatranscriptome	118	Y
F091416	Metagenome / Metatranscriptome	107	Y
F105059	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0132239_102557	Not Available	1015
Ga0132239_103015	Not Available	945
Ga0132239_104210	Not Available	809
Ga0132239_104807	Not Available	764
Ga0132239_105561	Not Available	720
Ga0132239_105754	Not Available	710
Ga0132239_109760	Not Available	571
Ga0132239_112359	Not Available	520
Ga0132239_113286	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0132239_102557	Ga0132239_1025571	F073276	RVRSQIYTEEGENSTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYNEQGDVDTTLQITKWSNLIAFAEKFVLHLTTTKTTNSIPEEVNLTLDSFTSIQRLITVQATFNISIKSEC*
Ga0132239_103015	Ga0132239_1030151	F025879	HEYYTKLQYCKVGVQMRQSNYGWSVSGTDCMMNGTPMIFHDSLCYREIDPSGLFFKYKKDFFNLLNSFLDDDEFRIKHELRSIERAKELSSNEANMIKQLHKKLN*
Ga0132239_104210	Ga0132239_1042101	F076034	MNDSSPQFKMREPIITIAAKQTPVIDRLHDCMTQALAYATAIRDNAQDDGHPIPIDLVTSFQNDYNKIIGSLHEAHHLTS*
Ga0132239_104304	Ga0132239_1043041	F105059	CYNWGYDVFVDGEKIGQINDTPEELADLLNEYFNTKEK*
Ga0132239_104807	Ga0132239_1048072	F073267	MLYSIHNQPPAPFPHPIPMPDGFTRTDASTFTQEEIQAAGYSGPYTEPSYNSSTEQLLWVNGEYVIEALPPVPRWVDFSSVMMSLPSINIMLGTLLQNAPGLYGGLVVGLQNASEGDTRVFLNSWNAGYAMELISPELITTVQEIAGEYDLPQSFIQALSPQT*
Ga0132239_105561	Ga0132239_1055611	F029761	MKKVVDVQPGFISNEVYKPEQFGNSVKLIDSNGNKVGTMGVSIGTRKQAIKEGSAIQAFMNKNGKKTYRRVDMSVYDSL
Ga0132239_105754	Ga0132239_1057541	F025994	MSKQEIQHLIDHAIREHELRVALWSGLLGLLLLLGTWHAIWMCR*
Ga0132239_107515	Ga0132239_1075153	F091416	MKQFKNILLRILATFAATGLGVVGAGTIAGVPVWKAV
Ga0132239_109760	Ga0132239_1097602	F005089	LHSIKLTETLALENYNQRNGVVDYRLDGVCNHYFPIYEGVNPSYRNGEICLTCKVAKTVKGQLRYTFQIDGKRIAEKRIVSEFLARGAFQG*
Ga0132239_112203	Ga0132239_1122031	F058819	VELHWFGKHGGAESYQFRGLIQDLQNANADIINISQPWNVAASPRANSFDKTIIKTNQRVNKRKQIKCSIPHEDAVYVASLFYSPEVYIIEGGKYVNVTISNAEILTDDNRATDIEVNFEIVYPNKPTAQL*
Ga0132239_112359	Ga0132239_1123591	F042640	YEELVHTARRFHDSPRDLVHHTYLQCINALESNQNILENLPGYFHTSMWNQAQNLFRKLYEIHETPTDTLVSDYDISEAIKREEAMIMANHLSWFDRTVLSLYLDGWSMAQVARESGINVSVLYESISQSKNKLRYVISKRTKEK*
Ga0132239_113286	Ga0132239_1132861	F015858	MSNLISWGTVYCETWWGDTDRTTLSIQNESAPPCFAPINDIAIAFQERVEADGGVLEGYACLVAALQDLGEDNYYELFDTYIQRMTDDGATLEGRDCLVEQLFNLN