Sample 3300009852

Basic Information
IMG/M Taxon OID	3300009852 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114530 \| Gp0149133 \| Ga0131851
Sample Name	Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 99 mira
Sequencing Status	Permanent Draft
Sequencing Center	Center for Advanced Technologies in Genomics, Sao Paulo University
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300009852 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114530 | Gp0149133 | Ga0131851

Sample Name

Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 99 mira

Sequencing Status

Permanent Draft

Sequencing Center

Center for Advanced Technologies in Genomics, Sao Paulo University

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	120283065
Sequencing Scaffolds	40
Novel Protein Genes	40
Associated Families	9

Dataset Contents

Total Genome Size

120283065

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	1
Not Available	15
All Organisms → cellular organisms → Bacteria	10
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium

Ecosystem Assignment (GOLD)
Name	Compost Microbial Communities From Sao Paulo Zoo, Brazil
Type	Engineered
Taxonomy	Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Ecosystem Assignment (GOLD)

Name

Compost Microbial Communities From Sao Paulo Zoo, Brazil

Type

Engineered

Taxonomy

Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Sao Paulo Zoo, Brazil
Coordinates	Lat. (^o)	-23.651072	Long. (^o)	-46.620675	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Sao Paulo Zoo, Brazil

Coordinates

Lat. (^o)

-23.651072

Long. (^o)

-46.620675

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001784	Metagenome / Metatranscriptome	635	Y
F004253	Metagenome	446	Y
F026032	Metagenome / Metatranscriptome	199	Y
F036417	Metagenome / Metatranscriptome	170	Y
F059782	Metagenome	133	Y
F075995	Metagenome / Metatranscriptome	118	Y
F078430	Metagenome	116	N
F088555	Metagenome	109	N
F098955	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0131851_1001087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6517	Open in IMG/M
Ga0131851_1001774	All Organisms → Viruses → Predicted Viral	4810	Open in IMG/M
Ga0131851_1002062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4338	Open in IMG/M
Ga0131851_1003535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3098	Open in IMG/M
Ga0131851_1003640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	3047	Open in IMG/M
Ga0131851_1003995	All Organisms → Viruses → Predicted Viral	2890	Open in IMG/M
Ga0131851_1006331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2224	Open in IMG/M
Ga0131851_1008855	Not Available	1863	Open in IMG/M
Ga0131851_1008944	Not Available	1852	Open in IMG/M
Ga0131851_1010964	All Organisms → cellular organisms → Bacteria	1667	Open in IMG/M
Ga0131851_1013215	All Organisms → Viruses → Predicted Viral	1519	Open in IMG/M
Ga0131851_1013790	All Organisms → cellular organisms → Bacteria	1488	Open in IMG/M
Ga0131851_1014397	All Organisms → Viruses → Predicted Viral	1455	Open in IMG/M
Ga0131851_1014641	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
Ga0131851_1015738	All Organisms → Viruses → Predicted Viral	1394	Open in IMG/M
Ga0131851_1016531	Not Available	1360	Open in IMG/M
Ga0131851_1017073	Not Available	1339	Open in IMG/M
Ga0131851_1017636	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1318	Open in IMG/M
Ga0131851_1020196	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
Ga0131851_1020583	All Organisms → cellular organisms → Bacteria → Proteobacteria	1223	Open in IMG/M
Ga0131851_1022891	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
Ga0131851_1023365	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
Ga0131851_1028279	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
Ga0131851_1029558	Not Available	1028	Open in IMG/M
Ga0131851_1035507	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
Ga0131851_1035623	Not Available	941	Open in IMG/M
Ga0131851_1037976	All Organisms → cellular organisms → Bacteria → Proteobacteria	912	Open in IMG/M
Ga0131851_1039818	Not Available	892	Open in IMG/M
Ga0131851_1042606	Not Available	864	Open in IMG/M
Ga0131851_1044737	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	845	Open in IMG/M
Ga0131851_1045863	Not Available	835	Open in IMG/M
Ga0131851_1050411	Not Available	797	Open in IMG/M
Ga0131851_1055162	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
Ga0131851_1056059	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
Ga0131851_1067283	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	689	Open in IMG/M
Ga0131851_1067293	Not Available	689	Open in IMG/M
Ga0131851_1077715	Not Available	636	Open in IMG/M
Ga0131851_1083855	Not Available	609	Open in IMG/M
Ga0131851_1102842	Not Available	530	Open in IMG/M
Ga0131851_1106808	Not Available	514	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0131851_1001087	Ga0131851_10010874	F059782	VAXGRAVQGRGSQLAAFSVLLDIESEQLSVMXRAELAQRLTVRFAXAIAEEFGGEEIEIRRSRE*
Ga0131851_1001774	Ga0131851_10017742	F088555	MYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYALDQGGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPVTEPTLRTDLRHHLQWLESVKG*
Ga0131851_1002062	Ga0131851_10020623	F059782	VLGSDAVRIEFETARGRVIPGMGGQVATFFVALEIWSEQLTGPERAELTHRLSTRIMEAIAEEYGGEEIEIRRSRE*
Ga0131851_1003535	Ga0131851_10035353	F059782	MRVEFNVARGRAVQGRGSQLAAFSVLLDIESEQLSVMERAELAQRLTVRFAQAIAEEFGGEEIEIRRLRE*
Ga0131851_1003640	Ga0131851_10036402	F088555	MALRMYFDETVSSLVRDDISPTLGSPDXYEGPGAGGTVERKLYIYSDNFQRTYSQVQLTSLNADAQVQLHYALDDNGSPGTWQTTVDLPDGDYRTPYPIWVRVTFAPTDEPTLRTDLRHWLQWLEAIAW*
Ga0131851_1003995	Ga0131851_10039953	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVQRKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQXGQPGTYQTXLQLPDGDYQTPVPIWVKVTFAPTTEPTLRTDLRHHLQWLEAVKG*
Ga0131851_1006331	Ga0131851_10063312	F088555	MALRMYFDETVSSLVRDDISPTLGSPDSYEGPGAGGTVERKLYIYSDNFQRTYSQVQLTSLNADAQVQLHYALDDXGSPGTWQTTVDLPDGDYRTPYPIWVRVTFAPTYEPTLRTDLRHWLQWLEAIAG*
Ga0131851_1008855	Ga0131851_10088552	F059782	MRVEFNVARGRAVQGRGSQLAAFSVLLDIESEQLSVMERAEXAQRLTVRFAQAIAEEFGGEEIEIRRSRE*
Ga0131851_1008944	Ga0131851_10089442	F078430	VEGAALMATMLGGVALPRVYVQESEHDWAGKPFRRWTLRTRPLEWSEYQAIEQMVREVGVARSIERAVDGTPHALGASQVALILDEGGGRTTETMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131851_1010964	Ga0131851_10109643	F026032	MSQPVPSRVSVAFAMFCXGYDPAFPTDLRRMTTGIGGWQADDPPTIELTLAVGLWSLEAGRIXCRFGIRRPGDDVVYFGEGDTTVDEPGEMAIMPLRLTVTLDRPGVYWAICEFDGRPLV
Ga0131851_1013215	Ga0131851_10132152	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGVVERKLYLYSDNFQRTYSNVQISALNTDDDVQIHYAMDQNGQPGTYQTNLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLRWLEAIAG*
Ga0131851_1013790	Ga0131851_10137902	F098955	MDSSAIPVFLAGPFPVLHCANVLEREAEVQLDVGLIIGGLPTIIAATSFPLDETWERVKAALSSGDARLGVAGVPHQVESPLGEPVIYPSAYIGLECANGERLILAHIRGLDPNQDPESYAREVIAALLNGQSPAELGELIED*
Ga0131851_1014397	Ga0131851_10143972	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQIXALNTDXDVXIHYALDQGGQPGTYQTNLQLPDGDXQTPVPVWVXVTFAPTTEPTXRTDLRHWLQWLEAIAG*
Ga0131851_1014641	Ga0131851_10146412	F078430	VEGAALMATMLGGVALPSVYVQEMEPDWVGKLIRRWTLRTRPLEWSEYQAIEQMVREVGVARSIERAVDGTPHVLGASQVGFALDEGGGQTTETTVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131851_1015738	Ga0131851_10157383	F088555	MAIRMYFDETVSLLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNADADVQIHYALDQNGQPGTFQTTLQLPDGDYQTPVPVWVKVTFAPTTEPTLRTDLRHHLQWLEAIAG*
Ga0131851_1016531	Ga0131851_10165313	F059782	VCXYVLGSDVVRVEFETARGRVIPGTGGQVATFFVALEIWSEQLTGPERAELTHRLSTRIMEAIAEEYGGEEIXIRRSRE*
Ga0131851_1017073	Ga0131851_10170732	F078430	MEGAALMATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYXAIEXMVREVGVARSIERXVDGTPHVVGASQVGFVLDEGGGQTTETGVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131851_1017636	Ga0131851_10176361	F036417	VLVRLATDEGEVVFRARWNRSPLELQRSILFRLRQGTHLWFETEWGHSICFKPESVWGAVVDGR*
Ga0131851_1020196	Ga0131851_10201962	F036417	MVYYARVPIRKLIPTVLVRLATDKGEVVFRARWNRSPLELQRSILFRLRQGSHLWFETEWGHWICFKPESVWGAIVDGR*
Ga0131851_1020583	Ga0131851_10205832	F088555	MALRMYFDETVSSXVRDDISPTLGSPDTYEGPAXGGSVERKLYLYSDNFQRTYSNVQITALNTDDDVQIHYALDQGGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131851_1022891	Ga0131851_10228912	F078430	MEGAALMATMLGGVVLPGVYVQEMEGEWAGKDIRRWVLRTRPITWEQYAAIEQMVREVGVARSIERAVDGTPHVLGASQVALILDEGGGRTTETMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131851_1023365	Ga0131851_10233651	F078430	MGRAALMATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQMVREVGIARNIERAVDGTPHAQGASQVALILDEGGGRTTTAMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131851_1028279	Ga0131851_10282792	F059782	VRVEFETARGRIVQGKGSQVAAFFVALEVHSEQLSVPERAELTQRLTTRIAEVIADEFGGEEVELRRRHE*
Ga0131851_1029558	Ga0131851_10295582	F078430	MGRATLMATMLGGVVLPRVYVQESEPDWAGKPIQRWTLRTRPLTWEQYAAXEQMVREVGXARFIERAVDGTPHVLGASQVSFVLDEGGGRTTTAMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131851_1035507	Ga0131851_10355072	F078430	VSEPDWARKPLRRWTLRTRPLTWEQFEAIEGLVREVGIARTIERAVDGTPHVLGASQVALILDEGGGRTTETMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131851_1035623	Ga0131851_10356232	F059782	VQGKGSQVAAFFVALGIESEQLTVPERGELLQRLTTRIIDAIAEEXGGEEIEVRRRHX*
Ga0131851_1037976	Ga0131851_10379762	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQITALNTDDDVQIHYALDQXGQPGXYQTTLQLPDGDYQTPVPVWVRVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131851_1039818	Ga0131851_10398183	F059782	PSGCALESDGVRVEFETARGRIVQGKGSQVAAFFVSLEVHSEQLSVPERAELTQRLTTRIAEVIAEEFGGEEIEVRRRHE*
Ga0131851_1042606	Ga0131851_10426062	F059782	VRVEFETARGRIVQGKGSQVAAFFVSLEVHSEQLSVPERAELTQRLTTRIAEVIAEEFGGEEIEVRRPRE*
Ga0131851_1044737	Ga0131851_10447372	F001784	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAEXVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAAHKGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*
Ga0131851_1045863	Ga0131851_10458633	F088555	MALRMYFDETVSSLVRDDISPTLGSPDSYEGPGAGGTVERKLYIYXDNFQRTYSQXQLTSLNADAQVQLHYALDDNGSPGTWQTTVDLPDGDYRIPYPIWVRVTFAPTDXPTLRTDLRHWLQWLEAIAW*
Ga0131851_1050411	Ga0131851_10504113	F088555	MALRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISAXNADADVQIHYALDQNGQPGTFQTTLQLPDGDYQTPVPVWVKVTFAPVTEPTLRTDLRHHLQWLEAVKG*
Ga0131851_1055162	Ga0131851_10551621	F078430	LIRRWTLRTRPLTWEQFEAIEGLVREVGIARNIERAVDGTPHXLGASQVALILXEGGGRTTTAMVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131851_1056059	Ga0131851_10560592	F078430	IRRWTLRTRPLEWSEYQAIEQMVREVGVARSIERAVDGTPHVLGASQVGFVLDEGGRQTTETAVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131851_1067283	Ga0131851_10672832	F036417	PTVLVRLATDDGEIAFRARWKRSALELQRNILFRMRRGSLLWFEDEWGHDLCFRPECVRAAMVDGR*
Ga0131851_1067293	Ga0131851_10672932	F075995	MSKYRSLRKXNVYITKNFKKVFYGMRTLYVKDHTGRVFIRYKNRYYQAHFDGYHTYHVRLK*
Ga0131851_1077715	Ga0131851_10777152	F004253	LSVVVPLPNKQLQPTVIPNRMRAASASFHYAIAPRWTRGRAAAELRR*
Ga0131851_1083855	Ga0131851_10838551	F059782	VRVEFETARGRIVQGKGSQVAAFFVALEIESEQLTVPERGELLQRLTTRIVDAIAEEFGGEEIEIRRRHE*
Ga0131851_1102842	Ga0131851_11028421	F078430	MATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYEAIEQMVREVGVARSIERAVDGTPXVXGAXQVSFVLDEGGGRTTTAMVYITAYRXVRPLSLPQRREIELQLEEA*
Ga0131851_1106808	Ga0131851_11068082	F059782	MRVEFNVARGRAVQGRGSQLAAFSVLLDIESEQLSVMERAELAQRLTVRFAQAIAEEYGGEEIEIRRSRE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009852: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 99 mira

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences