3300009848: Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France - F3ET

Overview

Basic Information

• IMG/M Taxon OID: 3300009848
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118233 | Gp0131527 | Ga0118742
• Sample Name: Wood falls microbial communities from Lacaze-Duthiers Canyon, Mediterranean Sea, France - F3ET
• Sequencing Status: Permanent Draft
• Sequencing Center: Molecular Research LP (MR DNA)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 54298688
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wood Falls Microbial Communities From Lacaze-Duthiers Canyon, Mediterranean Sea, France
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Benthic → Wood Falls → Wood Falls Microbial Communities From Lacaze-Duthiers Canyon, Mediterranean Sea, France

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → wood
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Lacaze-Duthiers Canyon
• Coordinates
  • Lat. (^o): 42.4666667
  • Long. (^o): 3.4666667
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036294	Metagenome / Metatranscriptome	170	Y
F078089	Metagenome	116	Y
F096629	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0118742_104746	Not Available	2132
Ga0118742_120112	Not Available	656

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0118742_104746	Ga0118742_1047463	F036294	MDRGSSDEAIVGVKLVASEDTVTCLRVKLPESDMDVGAEGRNM*
Ga0118742_120112	Ga0118742_1201121	F078089	LPEGKIIEQAYVILLKLDKNKEALVNNDWGKIGKKT*
Ga0118742_121997	Ga0118742_1219972	F096629	MSTPGKQPESSSMTYEEEEEMQHDIAKLRDQVQQVSLAQK