3300009842: Bacterial communities in Amundsen Sea Polynya. Combined Assembly of Gp0149108, Gp0149160, Gp0151052

Overview

Basic Information

• IMG/M Taxon OID: 3300009842
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120457 | Gp0149108 | Ga0131972
• Sample Name: Bacterial communities in Amundsen Sea Polynya. Combined Assembly of Gp0149108, Gp0149160, Gp0151052
• Sequencing Status: Permanent Draft
• Sequencing Center: Macrogen Inc
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 36616378
• Sequencing Scaffolds: 21
• Novel Protein Genes: 21
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	4
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomic Analysis Of Heterotrophic Bacteria Associated With Phytoplankton Bloom In Amundsen Sea Polynya
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Metagenomic Analysis Of Heterotrophic Bacteria Associated With Phytoplankton Bloom In Amundsen Sea Polynya

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Polynya in Amundsen Sea
• Coordinates
  • Lat. (^o): -73.3
  • Long. (^o): -113.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004613	Metagenome / Metatranscriptome	431	Y
F006001	Metagenome / Metatranscriptome	384	Y
F006403	Metagenome / Metatranscriptome	374	Y
F009761	Metagenome / Metatranscriptome	313	Y
F013024	Metagenome / Metatranscriptome	275	N
F016210	Metagenome / Metatranscriptome	249	Y
F019853	Metagenome	227	Y
F022753	Metagenome / Metatranscriptome	213	N
F023136	Metagenome / Metatranscriptome	211	Y
F043199	Metagenome / Metatranscriptome	156	Y
F047171	Metagenome	150	Y
F047312	Metagenome / Metatranscriptome	150	Y
F059054	Metagenome / Metatranscriptome	134	Y
F063090	Metagenome / Metatranscriptome	130	N
F073763	Metagenome	120	Y
F088363	Metagenome / Metatranscriptome	109	N
F094415	Metagenome / Metatranscriptome	106	N
F101886	Metagenome / Metatranscriptome	102	N
F102429	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0131972_10030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	64034
Ga0131972_10062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	31476
Ga0131972_10098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	10776
Ga0131972_10103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	18072
Ga0131972_10186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	9970
Ga0131972_10636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	5086
Ga0131972_10796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1967
Ga0131972_11021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	6261
Ga0131972_11154	Not Available	1328
Ga0131972_11177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5727
Ga0131972_11283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1212
Ga0131972_11524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1065
Ga0131972_11540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	5375
Ga0131972_11560	Not Available	1047
Ga0131972_11764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	5363
Ga0131972_11832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	5378
Ga0131972_12400	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	124345
Ga0131972_12480	All Organisms → cellular organisms → Bacteria	9091
Ga0131972_12746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	160728
Ga0131972_13029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	62086
Ga0131972_13654	All Organisms → cellular organisms → Bacteria → Proteobacteria	34794

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0131972_10030	Ga0131972_100306	F006001	MKFFLPIIVLIFSLSGCAKHVGIHNKDDSNLFTSSFETITGGSISDHILFGESSFELINIAKLRCKKISTKHKVKNFRRTFLGTIITDQMSIYEYDCEEDE*
Ga0131972_10062	Ga0131972_100624	F102429	XFKSNFSYFLSGISSVKYSTGYVMFLNFLVKKEFKNFFLATIPYLLGWFVYFMYTNSDPIINFFEPLKLSFMSNYRRDADIYSLLQIYFLGDKGSILKYISIAFIFLLNLLILIRINRQSSNFLKMSLVLICPLIFFPHSNYDYVLLFPLACYSLLNFDNYLNKINFFFVIYVFYLSRIVKHFLDIDWLYQPTLMLLIIVLIIVNTRTERKID*
Ga0131972_10098	Ga0131972_100981	F059054	LTKEVNKATYFPVFEFLSFENNKNKAPIVGRRIKDDKIGKFIILKLKMLIMQKDQLIS*
Ga0131972_10103	Ga0131972_101031	F022753	LKIVCKKKVSNIDWCEAAIKNFFPLIIFSLPLMIILVDKNIFKHKDVQKPIIFPPNKTIFFGSKIAGKKIREIKIIPEKKNNENKKFLIILIKN*
Ga0131972_10186	Ga0131972_101862	F019853	MIFSIDKDLALSDQDYKREKRIIKRLNITRLPFKITEENFCSRYIEMLKDMKPLFKYKSGEYAMKWCLSTDKKMRIFLLIFEANELGKAIYKENISTQLPEYSYKTIAQIVDQGIEKGFFIKLNARAKKTVDSKIRNIRPSEDLVVEFINWNIDIIATTASFQKKYN*
Ga0131972_10636	Ga0131972_106363	F006403	DIERKAIIKKAKKTIPNDLKLDFRFKTCFVEMINPANIQN*
Ga0131972_10796	Ga0131972_107962	F043199	MNTKNFKLSREDSQREQRIVSKLKIKKLPFKITVDNFCTRYREMFLDLKPLFKYQPGEYAMKWCFATEKRMRVFLIIFEANELGKEIYKESVSNQLPEYSYKTIAQIIDQGIDKKFFMKLPPRNIETKDSKIRNIRPSEELVVEFINWNIELISNISQFQKKYIN*
Ga0131972_11021	Ga0131972_110214	F047171	KALVLMERRSLKAEVIDLKASPSKNIVKKKLKFKTF*
Ga0131972_11154	Ga0131972_111541	F009761	RQIKSINILKDPASIGGKDVFRASLLIGYELPKINIINKTKR*
Ga0131972_11177	Ga0131972_111772	F047312	MSKPINLLKLSWIIFSVVSVGFLISFGVTSYQSRVVDEPNWMLCEADKGLKKPQYIKFHNTKKVIYNIYQQRWVEDMASMDVINSKGKEARPTIEIHEDKTRFTKTIYKRKQFLIFVSDKYYVFYKEIDDNFFWSSEVSKATAQHIIIKRDDLTMLDYKNEWVKAXXXXXXXX
Ga0131972_11283	Ga0131972_112831	F073763	NKTTATGIKNLKLWSKVNEIATQYKLNKKYPNPKHHPYQKKDLLLDIFSFLLKIKIKNKEKVIKLIIK*
Ga0131972_11524	Ga0131972_115241	F023136	LLIGKAFILLITKDIERKAIIKKAKKTIPNDLKLDFKFKTCFVEIIKLANIQNWVKNIIGIIKSGV
Ga0131972_11540	Ga0131972_115402	F004613	MVSDVTKKLNLSTEDLKRQKNIISKLNLAKLPFDISPDRMCALNLEMARHSSAVLKYQEDKSGIKWIFSSIKKYKVFLIIFESNELGEEIYKEKISSKLPEYSYKTVAQIVDDGVKKNFFIKLNARAKTTKDLKIRNVRPSEEVIIEFINWKIDLLASLMKFKKDLIN*
Ga0131972_11560	Ga0131972_115602	F016210	CEAGTGLKKPQYIKFHNTKKVIYNIYQQRWVEDMASMDVIKSKSKEAKPTIEIHEDKTRFTKTIYKRKQFLIYVSDKYYVFYKEINDNFFWSSEVSKVAAQHIIIKRDDFTILDYKNEWVKALQRNKKYTDVVIDNLFEEANGNIKSYEDILFSNGKTLKTQRSLDVFQCKEVAAVTAKI
Ga0131972_11764	Ga0131972_117643	F006403	LLITKDIERKAIIKKAKKTIPNDLKLDFKFKTCFVEIIKLXXXXX
Ga0131972_11832	Ga0131972_118323	F006403	LLIGRAFILLITKDIERKAIIKKAKKTIPNDLKLDFRFKTCFVEMIXXXXXXXX
Ga0131972_12400	Ga0131972_1240023	F088363	MKKLIYLFLTVLIVACSSDDDSSNDNNCPGQDALLAQYEDAASAFANSPSSTTCQEFISSLELFIQCGEGFTPSELEQFQQIVDTLDCSIY*
Ga0131972_12480	Ga0131972_124805	F094415	LGGNIGLFKDKNMIYTKNEMLNDLNASFTKGKIYSHSELRSFLESNKLFSVKNVAAYTYNRWNRGMIDIFPVLEWINRGTYKFLGTDFEYNGIIIHHPQGGIPYKIGHWENGKLFFFGRFDSFADWCNSTDDGIKVADLNSKIVFESSDGKITQKKILTDSRDDDVTFEKGYSLTLFDSTLGKLLRFKTEGDTFDFGNFSYIIKQIN*
Ga0131972_12746	Ga0131972_1274661	F063090	MIKLMTLVMALSMPLTALATDAIDKKLALSCTESLFLKGLDGVLKGYPGIAYPPTWQQGTGPYTYESRYDVSQTKRGKNELCAKYYGFVRPSQVSGNGKQANCKTNITGIKVILKSKAELALKDHQPFVCYFKDGSDITRDSYNFHSAWTAELLRP*
Ga0131972_13029	Ga0131972_1302914	F101886	MLKKIVTIGFCLFNVALFSQIGIEVAAVTPEQAMLEGMTQRIYASISHIDYIMAILWGVILFTALTAKKEYFLRAAWLYLGFYLCDIHFGHYMAMETNNTTWTISALMLVVIQCLFFYWSEKQIDAESFSS*
Ga0131972_13654	Ga0131972_1365415	F013024	MEKPATKFIATKLFWLGVIGTYILAGVLLNRLETNAGYEELRFTSLIPTLFYFFILFLSYRSFKTQAVRTTILQFVTQMLLLLPLMAMYMAVILFTTKFSS*