3300009723: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_233_18m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300009723
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110190 | Gp0141780 | Ga0123374
• Sample Name: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_233_18m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13046177
• Sequencing Scaffolds: 25
• Novel Protein Genes: 29
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	2
Not Available	15
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	1
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Gramella → unclassified Gramella → Gramella sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Louisana Shelf, Hypoxic Zone, Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.8679
  • Long. (^o): -90.4764
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000049	Metagenome / Metatranscriptome	3277	Y
F000235	Metatranscriptome	1500	Y
F000481	Metagenome / Metatranscriptome	1089	Y
F000491	Metatranscriptome	1079	Y
F000981	Metatranscriptome	814	Y
F002829	Metagenome / Metatranscriptome	527	Y
F012639	Metagenome / Metatranscriptome	279	Y
F016492	Metatranscriptome	246	N
F016973	Metagenome / Metatranscriptome	243	Y
F023281	Metagenome / Metatranscriptome	210	Y
F023864	Metatranscriptome	208	Y
F025479	Metatranscriptome	201	N
F033816	Metatranscriptome	176	N
F042166	Metagenome / Metatranscriptome	158	Y
F050285	Metagenome / Metatranscriptome	145	N
F059029	Metatranscriptome	134	N
F063612	Metatranscriptome	129	Y
F067819	Metagenome / Metatranscriptome	125	N
F073585	Metatranscriptome	120	N
F083376	Metagenome / Metatranscriptome	113	N
F090416	Metagenome / Metatranscriptome	108	N
F090440	Metagenome / Metatranscriptome	108	N
F093997	Metagenome / Metatranscriptome	106	N
F097458	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0123374_100177	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	618
Ga0123374_100751	Not Available	575
Ga0123374_104432	Not Available	1096
Ga0123374_107400	Not Available	774
Ga0123374_107453	Not Available	1175
Ga0123374_109427	Not Available	746
Ga0123374_109453	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	586
Ga0123374_110039	Not Available	663
Ga0123374_110066	Not Available	576
Ga0123374_112059	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	527
Ga0123374_112652	Not Available	558
Ga0123374_113087	Not Available	551
Ga0123374_114273	Not Available	600
Ga0123374_114465	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1056
Ga0123374_115085	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	695
Ga0123374_115309	Not Available	504
Ga0123374_115369	Not Available	888
Ga0123374_118718	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	544
Ga0123374_119234	Not Available	625
Ga0123374_121267	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1242
Ga0123374_121754	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	826
Ga0123374_123353	All Organisms → Viruses → environmental samples → uncultured marine virus	759
Ga0123374_123374	Not Available	630
Ga0123374_124034	Not Available	964
Ga0123374_124366	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Gramella → unclassified Gramella → Gramella sp.	607

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0123374_100177	Ga0123374_1001771	F023281	GFEFAKVLEVLNMPDDFREILDEYIDASERSHGQKECAEVFQCPYSLRDSVKRNFSGNSL
Ga0123374_100751	Ga0123374_1007511	F023864	MRSVATCTLFAIASARRAAVKSHNADGEEWTGTMTEWPDCMTIPTFPGKCPVEEHPGACYRTDGKMWSCWADWEELDDDDCQSMTLNDEIVGFEGACKYELWGKSMSEDEVPDCFDVDKCLAECHPITDKWGACYVEDDTGVDKAERCMCALKADAPGGDRAFLDTLLKYGCKTKQI
Ga0123374_104432	Ga0123374_1044321	F097458	TRIIELNHTLHRSYKLPPISLSFAFAALLPRRGIYALADTPRLFP*HEMPIDSGYELLGSPILFDTRTLAVQRQIKNS*
Ga0123374_107400	Ga0123374_1074001	F093997	LSPKGTVAGDDVGAKVTVPDTYQSNSVQAGLDDDRSGDKKPSSDKGGLKMQQKADDTELVEKSQHTFTTETPRPNAALETVEKSHVDSSQILEDARAGGYDGLSNVAKGILTGKYYTPSPDEVGVY*
Ga0123374_107453	Ga0123374_1074532	F067819	MWGESQSWWGTFASLVVVANAITLAVKDQYAEKLPIIGKIWPIMNWLALNVHHNKNK*
Ga0123374_108890	Ga0123374_1088901	F000049	IMADKVYTSAEFKRERDNFHALCKDLERADVKRWLKQILEILMAERSKDEKNSQNAKMEALIQKHEDLIPTVLKTQVKVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCIENVEELIERQEKSLSQLETKRSIVRDLIAKGKQLLENPDKPKFLDSHVKRIEVGWDDTKEKASTRLQLLN
Ga0123374_109220	Ga0123374_1092201	F016973	EKSNNKEMKLFAALAAVASANWNGVSSDNTCGMQISGDSIVNSTCTVSGSSISYVFAGNGAFITGANTFTGYDGTSGDVDVVVFFDQDCSSGECDNSTCWDAAVNCVDNGAATAGVFFMETVNDHRGAKGGNVNLQISGVSDGDTLSIDLAGFACQNISAPFGVVNADEDAWGNFYSDDGVFSVTASGNFGDLFQISITQQPGQTSALNLWESSVSN*
Ga0123374_109427	Ga0123374_1094271	F025479	MKVFVLLAAVCHISQSAPQWLSYAAVHPVASVVTGNSVPVSVGGYKAVAGSNGDLAGPVHEVPGLVPALAVQKQESSGDVSLSTGTGALAVLPVYYGKRSAEPQLVYGLPAYHHAIPYAVPTVAVKPLTLNTEVVATGQSVPVSVGGYKAEAGDNGELKGAVHEVPGLVPAPALNKQENSNGGALTVGTGAFVKYSLSKRSAEADPAILASSVSYVNPLPAVYHAPTYSYAHYPVTYAASPV
Ga0123374_109453	Ga0123374_1094531	F000481	LYWKCYAYGDELKPHVEFLDGIMLSSTRDIAPSCLENVDELIERQEKSLSQLDSKRNIVTDLIAKGKVILQNPDKPKFLEANVKRIQDGWEDTKNKAQQRLQLLNETKAAFIGYAENSETIASDFEQAEEEIKKVKKIFNLDAANADLKKRQDILKKTDDTISGLFKSINDHFNTMSITIPEDKKKGLAKEIKAV
Ga0123374_110039	Ga0123374_1100391	F023864	MRSVAICTLIATASARRAAVKSHNAEGEEWTGTMTEWPDCMTIPTFPGKCPVEEHPGACYRTDGKMWSCWADWEELDDDDCQSMTLNDEIVGFEGACKYELWGKSMEEAEVPDCFDVDKCLAECHPITDKWGACYVEDDTGVDKAERCMCALKADAPGGDRAFLDTLLKYGCKTKQIGYMDKAYEELCIFPDDGPQPIYKCDTV
Ga0123374_110066	Ga0123374_1100661	F000981	MAHKKLFDQLDTKAGPARGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYTEEEYIGFVERAVNNPGSYEHASFYNFILNCFVEADEQCEGRITYDQFDKLLTRAAVVPRHFGLAPPESSTEARKKMFDQLELVRGDKKTGYVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0123374_112059	Ga0123374_1120591	F000235	VAAALFVSAASAFHISGQEDLIKKFGRQNIKFDQTARSQFCNQCMEITVSSTGGTLEHQPQRLGKYTVEGSIWENMIPFWKSENNQYITPDPNSNPIMYYIKWVVSEMVGGFNAGVMNDAYTDGFNCPYEIPDQWQYEYQRQWFIDPTLKFTCTKTRAQWEEEQKML*
Ga0123374_112652	Ga0123374_1126521	F090416	NDLTVDYNQTVKRDLTVYSNLLVNNNLTVDYNQIVKRDLTVYSNLLVNGYEVIDGDLVVKKDVIIDKNLYLEGTLRASNLEVIGERTIIDTQTYETENLHIMNDSADGASVKIEHRDNVNNILEASNLSDNFVIIDKEVKLGINKVPIAQLDVNGDAYIETDLIVNNDVFINRNQIVEGSSIIKAD
Ga0123374_113087	Ga0123374_1130871	F090440	GNEISGLKLATGLRLKRVYHCRITDVGEDDDLRIIIRKSVGG*
Ga0123374_114273	Ga0123374_1142731	F025479	MKAFVLLAAVCSAGAAPQYLAWPYATHAVVTGNSVPVSVGGYKAVAGSNGDLAGPVHEVPGLVPALAVQKQESSGDVSLSTGTGALVSAYAAPLVHHVYGKRSADPQVLVNALPYTVGYHAYPYVVPAVKPLTLNTEVVATNQAVPVAIGGYKAEAGDNGDLKGAVHEVPALFGAPALNKQENSNGGALTVGTSA
Ga0123374_114465	Ga0123374_1144651	F016492	KSDKNRQNTMQILLFLLPAVAFAAHPAPHGYGHPKLYCRDTNTSVYAEVCVPQFRDEVTPETLPVKIVVPDQFCYESVITTCEETSTINKHTLCTSTYEAVEAKFAAGDALSAHVTQVTYEEKSESMRVTSCKASGYGHGGYGAGEHQYCREEYQTQAYKVPFVTEDLSIAASLSEPQPKEVCVDVDVEITEVKCSDAVAEKCVDLVKFEDSTNTVDTSTAVISEEPNCSQVTLTLPTQACSKPY*
Ga0123374_114726	Ga0123374_1147262	F000021	DALFRGEFEVVKELVQKMRDGVAAKNNADKIIDLNGTKKTGGTGIKQLRENIAESKLSYEIMDDAAQAFLKSKIMDNIHKYFYIIVFAGYMREAAAAAREAIEADKKADVALPASGKCSIPAKDLKLEKSFVDYVNATPSLRDLVEAGKGNLQWERDIPPAALNNLESLAAKDFKSNLGQIIHDIYQTAHQMFSDMPQGDHKKRAKYRFASKTLMRILPAGVRTEVEGLIEQKKISLDLYEILGVCTWVEPK*
Ga0123374_115085	Ga0123374_1150852	F012639	MSANNSGIVLTCSAVFAANAPVATVISATMQTSPTVTAVTELQVPLTENWIATDVYILAAAGAGTPTVIDPVVSMDKNRGRQLVQTPPLSSMLITNNTRPRFSPQPIGFEGGSIIRMFATSTVVNA
Ga0123374_115309	Ga0123374_1153091	F059029	GRLSLRLGQRQVLSQTSRRTAFDMGPFSCAYRWSAYADPALSLLGQSVFGLFWVYYLYHCWNHSEHHLCHAGFPNPLGEATDLVTGHYVGYKGTGALGSRMEILDESFGGRYNISRLQFLNEELGLPPANQPAPSSEDEEEEGTPMGAMLKKFGFSKGH*
Ga0123374_115369	Ga0123374_1153691	F000491	MLAPVRSAARPAARTFSASPWGTDHWRHDKQAFKAWAKEASEPGSSKAKRELYGFLALSFGDVDTDKDGLINAEQFDQLLAEVAALPRRYGLAPLDVGDAVSRAVNHKILFDSLDTKNGPARGVLGLDQFIEWAYDHVVTHVPKVPAKDVGLYHVEDYSEEEYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLSRAATVPRHFGLAPPESSTEARKKMFDELELKRGGKGTGYVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0123374_118718	Ga0123374_1187181	F002829	SISDEWMKKVDTLVKEWKLLDNTVTELNTWVAKDKTTEGENQFSLEKMESTLGELKNIFKQKEKLVEDL*
Ga0123374_119234	Ga0123374_1192341	F000981	DTRAGPARGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYSEEEYIGFVERAVNNPGSYEHASFYNFILNCFVEADEQCEGRITYDQFDKLLTRAAVVPRHFGLAPPESSTEARKKMFDQLELVRGDKKSGFVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0123374_121267	Ga0123374_1212671	F033816	ERDNRMMMKYLVLALIVGAAMAAPSEFEDQSYDLAENEARFLYFNSSSTATTLTLIGALILLGVIFYLVYVGGLLAPSAGSYSNYQRYGQDYNQYYGQARSADYGYDFNAVDILQWISMLQEVYEKFDYNDVDCQKLLICEVLRDEDSFGEVSRRLQGGFELAKYLEVLNMPDEFRELLDEYMDASERSLGQKECKEFFQCPYSLRESVKRNFSGNSL*
Ga0123374_121754	Ga0123374_1217542	F042166	LNQLETKRTIVADLSSKGKQLLENPDKPKFLDSHVKRIKDGWDETKDKASARLELLNNTKAAWEGYGAGLENIAVEFEKAEEEIKKVKKRFNLEAAKEDLARRQKIFGDTKNTIDGMFKDIQNNYDVMTMTLPEDKKDFVKKEVKAVQEKLEVVGRFKEKVDKIDEFVTNLDNFDKTLKMIDSWMKEADNQ
Ga0123374_123353	Ga0123374_1233531	F083376	MIRIYTDKETDNLVESVDLGRVSLGETTKYTMYMKNTDTQWSVHNIKVENTNPELRFEIPDTLKPNEVQEIFVYWTPKLDSREPLLTKFEFSGDVFIG*
Ga0123374_123374	Ga0123374_1233741	F073585	RAEAEAFFLTNHVKVSATGSKRNFDVDLSWKSTKPDWDWSTPENMKLDLNAKGNSPRWGEWSLSRDVTLAIANKVIQLDISGLSQFSQGAMATDTPIETEVHVKYLMNQRDLQGKLSKIINGKEYSVDFPEGFGVMPQIKMGQ*
Ga0123374_124034	Ga0123374_1240341	F063612	LRSVARGSPEDEATSVVEEAGLKIPGREMASKEVGHSSVL*
Ga0123374_124287	Ga0123374_1242871	F000049	MSFWQENYAFIKEVYDMRHLKMAEWMENVEKSIARIMADKVYTSSEFKRERDTFNSLCKDLERAEVRKWLQQILEILMAERAKDQRSTEFGKLDTLIKKHEELIPNVQKTAVMVDLYWKCYAYGDELKPHVEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLAQLDSKR
Ga0123374_124366	Ga0123374_1243662	F050285	MRRLYDFQCDNGHVNEFLRDSDVEEVDCPDCELKARKIVTPVKINREKNSWKEVRQWARNRESHMKYERKQGISD*