3300009530: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009530
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0147197 | Ga0129361
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17587161
• Sequencing Scaffolds: 8
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gymnodiniales → Kareniaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000100	Metagenome / Metatranscriptome	2281	Y
F000738	Metatranscriptome	913	Y
F001583	Metagenome / Metatranscriptome	668	Y
F002083	Metatranscriptome	595	Y
F002825	Metagenome / Metatranscriptome	527	Y
F007472	Metagenome / Metatranscriptome	350	N
F013634	Metagenome / Metatranscriptome	269	Y
F015066	Metagenome / Metatranscriptome	257	Y
F048780	Metagenome / Metatranscriptome	147	N
F060572	Metagenome / Metatranscriptome	132	N
F074811	Metagenome / Metatranscriptome	119	N
F100417	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0129361_100460	Not Available	1346
Ga0129361_101963	Not Available	806
Ga0129361_102252	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	767
Ga0129361_103053	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	694
Ga0129361_105407	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	575
Ga0129361_105815	Not Available	560
Ga0129361_106705	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	534
Ga0129361_107534	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gymnodiniales → Kareniaceae	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129361_100460	Ga0129361_1004602	F074811	MPTKTRLKTASCPLGKWEAIVKSEDVERIREFLTRDNSLRTVGELTALSQQYLGHGQAGSCGPCNSKLMKELETLVNNADSNS*
Ga0129361_101963	Ga0129361_1019631	F007472	MVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKVEFSYTRIAASDSSLASSLYNYTQTTFDMFGQTVNTQVANTKIVKTSQQTYAQLGASSVNQQFKIQQAFVLISLLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLIVVASEVIAFLAFLGLSDKVASDSPNCLSGPCQKFSDSVTTQLGQSTLTIGNEASVAVALQQIASWGPTAGWYLVLATIPLTVLARSESTRLNSSHFSSAYA
Ga0129361_102252	Ga0129361_1022522	F100417	MLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHSH*
Ga0129361_103053	Ga0129361_1030532	F048780	VKEKKTALSTKPLPQALVIIDDFADRYDVMKSAGNVLTTLFIRGRHFGCSCWISSQKLTAISTVARVNFRFLCVWRLRNQKEIVALLEELSAIYPIPTLHEMYEAAVSDEPHSWWYIDLVAKEKQRMFHIRFEHRQIVEEVSPQELLAAAPRPDVDPEPAQQL*
Ga0129361_103232	Ga0129361_1032321	F000100	YDRKQASFAQVSALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAYDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDTTTTRDADVKYLADLTATCEQKASDFESRQQLRAEEIVAIEKAIEIISSNAVAGNAEKHLPTLVQSDRSSFALLRSDLNMQTQSRVADYLRTRAKELNSR
Ga0129361_104375	Ga0129361_1043751	F002825	YDQEIAKCTDYYSKTCAAMEVCRGQIAAANYIAANSRALILDAQANINRCEVDIPTRKYELKQHLLKCKAELYKMNTRLKIVLGDIAVMTMILEMTDCDKSFLQTQHMSLLHCKDPCTNKTFVTFDHKGLQEKVGQLKSAFSTELMKDAFNDLFEGIESIESTEFLQTGSAQSPININKTQFNNPPVPVTKVPPNPCTDPYAGAP
Ga0129361_105025	Ga0129361_1050251	F000738	LKQMKDTMVKDLADITATEKTSISDYESLMEAKTKEVHSCTKSIETKSARVGELGVSIAEMHNDLDDTSAALLEDKKFLANMDKTCDAKKKEWEEITKARAEETLAIQETIKILNDDEALELFKKTLPTPALLQLTESGRAVKSRALAVLQQGKTTDFRLNLISLALKGKKVSFEKVLTMIDEMVALLKKEQVADD
Ga0129361_105407	Ga0129361_1054071	F001583	FNKFYKTYYIIFTNKHLNTDQLTRLMVLHYFTP*YYLYLVKLHVMFCHES*DSDSGENVYEDKSGTYVS*FYDAFLKEIQDA*Y*TLYVFVYFIIHHFDASTVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MALWFVLLASLPIIYNFYNSSKYYLPIIPMRSEEHTSELQSL
Ga0129361_105815	Ga0129361_1058151	F013634	GALTQSKIDKALAGEKVYTKPKTIFGKLIGGISGRTAAADASASVKTAPISDTVVNALQPQSMNLDPNMRQTFPVTGEVSFGGQATQKTWLPFAIIGGIIAVFYFLFGGKRRRRGGRR*
Ga0129361_106705	Ga0129361_1067051	F015066	LTAEGAEFSSTDTAVTFQEDTVVKFAGAGRLDVELVDRSDPSFLDLYIRELAASYAQKTDAYAANIAAQNSAASTGATIYKSIADGIADSFGVMRFTPNRLLVANTGGEDGIDYSGLLGAVDGSGRPLFAAAVPSNAGGLISQGSTAGTVAGLSLVVDPNYTGNNANAKYALVYPSA
Ga0129361_107534	Ga0129361_1075341	F060572	LAVTVAYSFCSTMHSVVYLLFGLAAASGAREWEIANIARNAKGEISDAELGLLNLKNAMQDPSLLKEMAESLRRPEGRGELVKMMANPKFQEQAKNVVDDMRARGISANFLNPASYAKKQDSSKTLQTLLLALNPVAATRSTAASRPFCARRVGCDAISCPSPNHCCHRL
Ga0129361_107672	Ga0129361_1076721	F002083	VKTRNEELLALADTIKILNDDDSLELFKKTLPSSSFMQLKVSSTTLRANALALIRSVQSSAKFDRHHLDFIALAIQGKKIGFDKVIKMIDEMVITLKTEQTDDDNKKEYCGKELDQADDSKKSLEKSISDLDATIADTKEAIASLEADIEALQSSIKALDKAVAEATEQR