3300009501: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/28/2013_ DNA (PacBio error correction)

Overview

Basic Information

• IMG/M Taxon OID: 3300009501
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0103143 | Ga0124838
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 2_5/28/2013_ DNA (PacBio error correction)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 725689318
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.076217
  • Long. (^o): -89.411742
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054825	Metagenome	139	Y
F069722	Metagenome / Metatranscriptome	123	Y
F102689	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0124838_10001559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3144
Ga0124838_10008560	All Organisms → cellular organisms → Bacteria → Proteobacteria	2581
Ga0124838_10116671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1336
Ga0124838_10127396	All Organisms → cellular organisms → Bacteria	1276
Ga0124838_10341701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	642

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0124838_10001559	Ga0124838_100015592	F054825	VSTHPATRNLDLWLIDKDDPGVTKPGPGVVYDRAGIGIVFMDERGRDFTFIDTGCALEAWAGQGARLSPALARDLAAALERFADYADGHTAYLLTEADDA*
Ga0124838_10008560	Ga0124838_100085601	F069722	MRVRLTAELDPKAKRERPDLKTGAAHEKALGLGSGATLQ
Ga0124838_10116671	Ga0124838_101166711	F069722	MRVRLTAELDPKAKRERPDLKTGAAHEKALGLGSSGAAQ
Ga0124838_10127396	Ga0124838_101273962	F069722	LNAKLDPKAKKGRPDWEKGAAHEQALGHRSGAALQER*
Ga0124838_10341701	Ga0124838_103417012	F102689	MGLLDGILKLVKKVVDSVLSEITKQINRVQNEVLQEMTKMVTVGFDDIWRGEDADQFKEKVLKMAVPQAESIVGICSSTFSGINQAMNIIQNADKKVNSIVSDLASEYAKI*