3300009390: Microbial communities of water from the North Atlantic ocean - ACM34

Overview

Basic Information

• IMG/M Taxon OID: 3300009390
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126420 | Ga0103831
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM34
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104810559
• Sequencing Scaffolds: 21
• Novel Protein Genes: 29
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1
Not Available	9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000981	Metatranscriptome	814	Y
F001583	Metagenome / Metatranscriptome	668	Y
F002435	Metatranscriptome	559	Y
F003081	Metagenome / Metatranscriptome	508	Y
F004358	Metagenome / Metatranscriptome	442	Y
F006113	Metagenome / Metatranscriptome	381	Y
F006651	Metatranscriptome	367	Y
F007607	Metagenome / Metatranscriptome	348	Y
F009426	Metagenome / Metatranscriptome	318	Y
F022892	Metagenome / Metatranscriptome	212	Y
F025039	Metatranscriptome	203	Y
F027191	Metagenome / Metatranscriptome	195	Y
F028518	Metatranscriptome	191	Y
F031108	Metagenome / Metatranscriptome	183	Y
F031514	Metagenome / Metatranscriptome	182	Y
F061505	Metatranscriptome	131	Y
F064580	Metagenome / Metatranscriptome	128	Y
F064686	Metagenome / Metatranscriptome	128	Y
F068484	Metagenome / Metatranscriptome	124	Y
F071924	Metatranscriptome	121	N
F079565	Metagenome / Metatranscriptome	115	Y
F090442	Metagenome / Metatranscriptome	108	Y
F102647	Metagenome / Metatranscriptome	101	Y
F103052	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103831_1000617	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2240
Ga0103831_1001041	All Organisms → Viruses → Predicted Viral	1819
Ga0103831_1001076	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1796
Ga0103831_1001565	Not Available	1551
Ga0103831_1007675	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	811
Ga0103831_1007957	All Organisms → cellular organisms → Eukaryota	798
Ga0103831_1011535	Not Available	684
Ga0103831_1012740	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	657
Ga0103831_1015476	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	607
Ga0103831_1016535	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis	591
Ga0103831_1016961	Not Available	585
Ga0103831_1017122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	583
Ga0103831_1019655	Not Available	551
Ga0103831_1020356	Not Available	542
Ga0103831_1020515	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus	541
Ga0103831_1021296	All Organisms → cellular organisms → Eukaryota → Sar	533
Ga0103831_1021535	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	530
Ga0103831_1022553	Not Available	520
Ga0103831_1022841	Not Available	517
Ga0103831_1023592	Not Available	511
Ga0103831_1024275	Not Available	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103831_1000617	Ga0103831_10006175	F064580	MKEVITEVSIKADRSDWNAVFNSIKVGVDDEGAGSYLKIVGEDKNNEGSVLTLDWEEWDALVEVVAKYRKEWEWK*
Ga0103831_1001041	Ga0103831_10010415	F064686	MKNKITHEEYQKMWYALNDGIITEQEWRVFCDALFNQVLEENKDVMVRLKFR*
Ga0103831_1001076	Ga0103831_10010763	F004358	MFGLITMLLTTLGATGMGSMLKIVAGTIQSINDSRQQKAQRELARDLAMSNANASFQKAVFEGGSEQESMFTRGTRRIIALIGMLNFATISILCTIWPSVTLVTFTPPENKESISILYGLVKFPSGADVTTAITTGHISLVSIATLGAIIGFYFTPGGKN*
Ga0103831_1001565	Ga0103831_10015652	F102647	RNHLAVDSALEKESIKEAVIDGHNQINEASSKLESVAKENAVLKEQLDQVKANLILEQKTAGLDKKAQKYARKVLSGKSEEFINENFDYTMKLFKKNESNRLDMLKEEAFSARENVDRVIYEHTTEEKVVEESSNPYMDELSKY*
Ga0103831_1007675	Ga0103831_10076752	F002435	KETGCWVNTGMFVQVWSAIRDAGHATNHNWVIKVDADAVFFPSKLVRALSDYTVPQEGVYMENCKYVDWGYFGNLEVFSKQAFITLVDNLETCYTAIPWKDGVLGGKYGPTGEDLFAQKCMDMLGVGRQENWMLTTDGACQADRPEEEKHNKKYVPPCEGVSTPTIHPYKKPEMYRKCWQQAVEA*
Ga0103831_1007957	Ga0103831_10079571	F022892	PLAKSIGVFITILPPNIVAIQLKILIPVGTAIIIVAAVK*
Ga0103831_1011535	Ga0103831_10115351	F071924	LRLKVKTRTALEQIVPFVEFCQRENLIVSVSCPISTKKGRQQVRGFLAYLQTRNEGDADRVEELIQQYNASNNSPFNTWHRIPPSTWKNQA*
Ga0103831_1012740	Ga0103831_10127401	F001583	VFNNIYKTYYIMFTNKHLNVDQLTRFMVLHYFTP*YYLYLVKLHIMFCHES*DTDSGENTYEDKTGSYIS*FYDGFLKEIQDA*Y*TIFAFMYFFMHHFQGATVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGVLVITPTHYEGLM*FVL*LLLLAILPIIYNFYNGYTRYVNAIPMQNSLLQTTFFIVFMMCIYCSASMLPCGRYYYEPEGGYV
Ga0103831_1015476	Ga0103831_10154761	F001583	NHLSDLTLTIGANIFWSLFNNTYKFYYIIFTNKHLNTDQLTRFMVFHYFTPFYYIYLVKLHVLFCHES*DTDSGETTYEDKSGTYVS*FYDAFLKEIQDAWY*VLYIYVYFFLHHFNGSTVNYFFFER*NIAELDEIRFYGVAPH*YFRPFMA*LIACPHHKTGIFGVIFYFIILFYQPTLHGTSEFNNFNKKTAVFMKYKI
Ga0103831_1016535	Ga0103831_10165351	F028518	IFFCLQGLIILVVGIALCLGDDAVIPEQLKPIDSLRVRLIGPTELTLSAYLFGSILTGEAQAMQPFCGLFLLVAVALHYVIGDVEGCPMIIGMAMAHICLGLFWKAKDEAKKQ*
Ga0103831_1016961	Ga0103831_10169611	F068484	VSIRTMNSHTYETRTVDYINLQGLGASTDNFFTVSQPFTAAHAEKRIFLNFKGTTSSAACSGRGLCDGSSAECQCFKGYTGQACQIQNALAA*
Ga0103831_1017122	Ga0103831_10171221	F003081	ELREEMFNDTRFGAEVYYMHVRGVDTLMILSYLHILKKIFLKS*
Ga0103831_1017280	Ga0103831_10172801	F103052	MHDLQHTFKLAGDGFWGAEKGRTVTITGYEVARYTQEQIDDYVDWAKVGDIEHVSVMHNSTWDVYTDSAFVDAARTVTGIADLDFTEQGMQDDNVASMEV*
Ga0103831_1017395	Ga0103831_10173951	F031108	MHLSGYNGADEDEIMDNIFSRFSKEGRTPSGHKTGQKLLMKDDAKLAAGTVLEAAHKLAPKDVPGYLDANFENAWQHFDQNHEGWIRYEETHTFQRYLMGSLN*
Ga0103831_1019465	Ga0103831_10194651	F000237	ES*DTDSGENTIEDKSSTYIACFYDAFLKEIQDA*F*TQFVFIYFVLHHFNASTVTYHFFER*NISELEEIRFYGVAPH*YFRPLMGLLTITPTHYEGLL*MGM*FLLIAAMPLTNSFYNSGVKYLPVIPSQSSLLQTSAFIIFMLSMYCAASMLPCGRYYYDPEGGYVGNP*VKISYQFIYLY
Ga0103831_1019655	Ga0103831_10196551	F006651	SATVTGACSADEQAALADPATTGQKANDCGTKSFNVLTGNFNHDKFNECFTASAGISTGCSECYAVSGEYGAANCKADCLLGWCKSGCLECTKPAQADLATCTGFATPTADPCETISV*
Ga0103831_1019791	Ga0103831_10197911	F061505	QTAAKEKKAGIEASIAEATDGVSALTDEIATLEQDIKDLDKAVAQATEQRKEEHADFTSFSTENNAAQQLLAKAKNKLFKFYRPNLHKEAPKRELTDEEKILASSGRSDMIATDAPQMIAGTTQTVYVQMKDNAGAGPPPPPETWGAYQSKEGKSNGVIALLDNLVKELKDEFTEAKHDEET
Ga0103831_1019949	Ga0103831_10199491	F025039	VKMALKVLNDYYSKSDKAHDSADGASTGIIGLLEVCESDFSKALAEMTAEEQTAAAAYDAETKENEIMKVTKEQDVKYKTQEFKGLDKEITELTSDKETSGTELAAVMEYYGKIKDRCVAKPETYEERTKRRNAEIEGLKQALQILNDQTAFVQRKRRGFRGAIQ*
Ga0103831_1020304	Ga0103831_10203041	F000055	SAEAIRGPPPPTAADTPSSGYYGADEDDVMNNIFNHYAVPVTNAAGQATGQHVLYRDGAQKACAEILLVTKQGSEAKMEAYMAEFFPRTWAKFDMNNTGEIDITESHTFFRSLLGRLNQFVLAPGSLTDISV*
Ga0103831_1020356	Ga0103831_10203561	F031514	MWDVVYVDEWKGEPTKGQMNEDFGLIAEKDFYVVSAMSSGRYLDLINNRNLVIKTSNQRRTQVWYFDQRSLTIKTRYNNQSWDIQNSGRTNNMQIWSSNSNWF*
Ga0103831_1020515	Ga0103831_10205151	F079565	GGASTIHTIEGPGNDGCTAWGCRVSEHYSNSKFHMRIEHDASGAWTITSDGQVLCGWNPAPDNRAWDYIKQMHQQRGSVIYSSEWTGWVPVDDCGTDEGDLYGSSFSISNLKISGSVVQGPEPTECPSSVSV*
Ga0103831_1021296	Ga0103831_10212962	F027191	MQRKERKERLKNEIEKPLLHSINLVRVVRLLISPKKKRMKIEVSKTMKPAFLLGTAFNIAYWHRKYHSGTICKGVSNALTSKALSGCEREDTPK*
Ga0103831_1021535	Ga0103831_10215351	F007607	HFIQKPQRMAQFATGMNGDEDLGEDITMKGDKFHFIQRPAANKLFATGMNGDEDLGQDITMKGEKFHYNQPSFVQFATGMNGDEDLGQDITMKGEKFHYNQSNLVQFATGMNGDEDLGQDITMKGEKFHYNQQ*
Ga0103831_1022553	Ga0103831_10225531	F009426	FLKVKLKNESFSTAAKVNKNVKLLLNMTLDEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*
Ga0103831_1022828	Ga0103831_10228281	F000075	VNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103831_1022841	Ga0103831_10228411	F006113	AAIICGVSATLSHEQLDEIAFNALHSETYESSFLEVMSDEKGSRCPVGRVGCPMCYDIVDRFNQDVEIPEHNEAFEHFCDGYINKRWKASYEMLTGGQLDPMKEKIRCVSVSAGVKERFVQGCPRGNCAAASACSAFC*
Ga0103831_1023592	Ga0103831_10235921	F000981	RGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYTEEEYIGFVERAVNNPGSYEHASFYNFILNCFVEADEQCEGRITYDQFDKLLSRAATVPRHFGLAPPESSVEARKKMFDELELKRGGKGTGYVTARTFWEWTVVHVKGMIDLQKAGKGWRENH*
Ga0103831_1023808	Ga0103831_10238081	F000075	LLVSLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103831_1024275	Ga0103831_10242751	F090442	LFQLEYESGKSGIRRGIPAKPRKCIGKKQTLTPINVAQK*