3300009382: Microbial communities of water from Amazon river, Brazil - RCM19

Overview

Basic Information

• IMG/M Taxon OID: 3300009382
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126455 | Ga0103866
• Sample Name: Microbial communities of water from Amazon river, Brazil - RCM19
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 87225231
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → river water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Amazon river
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001926	Metagenome / Metatranscriptome	616	Y
F009078	Metagenome / Metatranscriptome	323	Y
F020087	Metagenome / Metatranscriptome	226	N
F020700	Metagenome / Metatranscriptome	222	Y
F022206	Metagenome / Metatranscriptome	215	Y
F038530	Metagenome / Metatranscriptome	165	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103866_1012394	Not Available	785
Ga0103866_1012493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	782
Ga0103866_1012580	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	779
Ga0103866_1016381	Not Available	686
Ga0103866_1023591	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578
Ga0103866_1027607	All Organisms → cellular organisms → Eukaryota → Sar	538
Ga0103866_1028463	Not Available	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103866_1012394	Ga0103866_10123943	F009078	HVTKPAHSREGAITDKTGGCNRDAECSGKNVVRRAARNTGQWKVTGGADFTTKPIWLSGMRKGSVFVRRVAPKGSYAVLVVSGAVAKAAGSH*
Ga0103866_1012493	Ga0103866_10124931	F038530	MRPTASHAAVSSVGKHTARESEAPNAVRMEKSAWRAPTSDKKK
Ga0103866_1012580	Ga0103866_10125802	F020087	MYGRPFEILEGDDLQSLCESTIKKGGGALATNTAMMCRPFCASGAGNPIISAHRSPIPGFEWDEVWFGFEDFTSEEEFLRKHGYYGSGRCYIVVRVDGRKKLVALKDFIQHVPDAILGPKLKALGHGMFRYSKFFINKNRLPHHTHDVKEEAYWIEPTMIPDYDLFDEQCFMSIGLHQDFGPAELRKLLTVEGWNNPMNKIKRHA
Ga0103866_1016381	Ga0103866_10163811	F020700	MTARLSLHLRFARLCPKTLQGAFSDAAAGIAATSIRLRIYVLFQAVKPEKV
Ga0103866_1023591	Ga0103866_10235911	F022206	FMQQAEQARAQDLVTAVNLAKRADLFAADLVSRLP*
Ga0103866_1027607	Ga0103866_10276071	F001926	VKHEDIPETNKPKIRNAVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRRRYERKRIKIEKLLILGYTTSGDP*
Ga0103866_1028463	Ga0103866_10284631	F009078	MVHVNKPAQAREGPITYKTGGGNRDAECSGKNGDLPARKGNRSHWKVTGGADFTAKPTRLSGMRKGSVLVQGVAPKGWYAV*