3300009355: Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone3_total_RNA

Overview

Basic Information

• IMG/M Taxon OID: 3300009355
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117975 | Gp0126377 | Ga0103788
• Sample Name: Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone3_total_RNA
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Florida
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52622272
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Thrombolites From Highborne Cay, Bahamas
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Microbial Mats → Microbial Mats → Microbial Communities Of Thrombolites From Highborne Cay, Bahamas

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → cay → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Highborne Cay, Bahamas
• Coordinates
  • Lat. (^o): 24.72
  • Long. (^o): -76.82
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001926	Metagenome / Metatranscriptome	616	Y
F030135	Metagenome / Metatranscriptome	186	Y
F037503	Metagenome / Metatranscriptome	168	Y
F047147	Metagenome / Metatranscriptome	150	Y
F060086	Metagenome / Metatranscriptome	133	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103788_1002370	Not Available	998
Ga0103788_1002506	All Organisms → cellular organisms → Bacteria	978
Ga0103788_1003174	Not Available	900
Ga0103788_1003506	All Organisms → cellular organisms → Eukaryota	870
Ga0103788_1004707	Not Available	782
Ga0103788_1005087	Not Available	760
Ga0103788_1008798	All Organisms → cellular organisms → Eukaryota → Sar	619

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103788_1002370	Ga0103788_10023701	F047147	MAVTKGLVREEQLLEDMCLLGSMTMEIAQILTLH*
Ga0103788_1002506	Ga0103788_10025062	F037503	MPLGAASDLSLAEVELLIGLEGFTAYQPLTNSECCKIYPGVSAWVLRSVREREITQTIS*
Ga0103788_1003174	Ga0103788_10031741	F047147	AIIVAVTEGPVREEQLLHDLCLLGAVTVEITQILTRAGFA*
Ga0103788_1003506	Ga0103788_10035062	F060086	GQEDPFELDSILLLSIGQHGEDSKRQYIYLYNHETPLLAGLIDLLY*
Ga0103788_1004707	Ga0103788_10047071	F030135	IAPEGLKDREELATLSSTTDIWHSTYAGCQFPDAILPGWEAFDLVAGPLN*
Ga0103788_1005087	Ga0103788_10050871	F030135	IAPEGLKDREELATLSSTTDIWHSTFVGRQFPDAILPGTEAFDLVAGPLS*
Ga0103788_1008798	Ga0103788_10087981	F001926	VRHEDIPEINKPKIRFAVLEGDKLMKEVDNGGYNVHPVPPPNSEIKERIRRRYERKRIKIEKLLTLGYTTSGDP*