NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009348

3300009348: Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone2_total_RNA



Overview

Basic Information
IMG/M Taxon OID3300009348 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117975 | Gp0126375 | Ga0103786
Sample NameMicrobial communities of thrombolites from Highborne Cay, Bahamas - Zone2_total_RNA
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Florida
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size47559849
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
Not Available5
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities Of Thrombolites From Highborne Cay, Bahamas
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Microbial Mats → Microbial Mats → Microbial Communities Of Thrombolites From Highborne Cay, Bahamas

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecaymicrobial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationHighborne Cay, Bahamas
CoordinatesLat. (o)24.72Long. (o)-76.82Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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