3300009347: Microbial communities from sand-filter backwash in Singapore swimming pools - JW-1

Overview

Basic Information

• IMG/M Taxon OID: 3300009347
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118565 | Gp0137165 | Ga0115920
• Sample Name: Microbial communities from sand-filter backwash in Singapore swimming pools - JW-1
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 502681472
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities In Swimming Pool Backwashes
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Swimming Pool Sandfilter Backwash → Microbial Communities In Swimming Pool Backwashes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.28967
  • Long. (^o): 103.85007
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003009	Metagenome / Metatranscriptome	513	Y
F014281	Metagenome / Metatranscriptome	264	Y
F022421	Metagenome / Metatranscriptome	214	Y
F043479	Metagenome	156	Y
F052765	Metagenome / Metatranscriptome	142	Y
F054614	Metagenome / Metatranscriptome	139	Y
F056350	Metagenome / Metatranscriptome	137	Y
F066904	Metagenome / Metatranscriptome	126	Y
F099503	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115920_1051208	All Organisms → cellular organisms → Bacteria	1208
Ga0115920_1132364	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	785
Ga0115920_1192406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	553
Ga0115920_1269816	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium	11119
Ga0115920_1385673	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	835
Ga0115920_1494652	All Organisms → cellular organisms → Bacteria	580
Ga0115920_1707012	Not Available	721

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115920_1051208	Ga0115920_10512081	F066904	HLTGLGHRVDPAPPQARFDFFVDGEVRLALRVAYPSSSRRRVHVGGRHYNYVYRAWNFNFHHRGKVGERYSDFFACVPLVPGQPLDLTQAFVIPWEAISGKTFYLPDSRRSYAGKFATYRNAWDQIRPSESHDAGEENEPVTA*
Ga0115920_1111527	Ga0115920_11115272	F052765	VMEKGPTGLSAYVPELPSILVTGRTVEELRARAAEAIQIYWEEVRAEESPTAVLEEIEVELRG*
Ga0115920_1132364	Ga0115920_11323641	F003009	MTTNIKKVVQYFSVMTVSFHDINALFGFFTFLTIASQLVSGTMLAFSLIPEPMLIPMVREEEDVEDLYTDDFF*
Ga0115920_1192406	Ga0115920_11924061	F014281	GAAESDLKISLLIMLIGTLLAAVHFTSASERQSETLPQ*
Ga0115920_1235025	Ga0115920_12350251	F054614	MTFTLTGKSSVLAANFFPAVDLSDDEYELGLTDFEAYHTIPNVNSSNNKFYFGQDDVEIMIPEGSYELRDIHEFLKNAI
Ga0115920_1269816	Ga0115920_12698162	F056350	VRWNKEKTLSFFDCSVFRHGSYFNLSILNVFNYFKNLRVSFHEIFSLFGFFTFMTIVVQLVSGTMLAFSLVPEPMLVPTVRDEEDIEDLYTDDFFWLHERGVDLIFIFSYFHLFRKLYLNVFDLETEAS*
Ga0115920_1385673	Ga0115920_13856731	F022421	MARWLRWNDGAHVLLADKSEAGWYFLPDRGFDTVTNTTHGEYTPEHVHHNYLYTDEYERSRQQRGKEGAGHG*
Ga0115920_1494652	Ga0115920_14946522	F099503	MDSLAGARQTDGVELHLYRLLLLNLALQLFDGVATYQGLQSGVREANPILVAAFGLIGVGPALLLFKAKACGLLVLLHRTAPRTVGITVMRALAAVYCVFSLGPWLGKFASMAAGVI*
Ga0115920_1707012	Ga0115920_17070122	F043479	MAIALLLLLASVAVADDATTVTIKKWKVDPVELLDKPDGTVVTSKPAAELPLQAVRSGQGWLKVSVGGKDYYVDASQARTDLKLSGKPKCDTLAGATGHAASRGLGDEGCEP*