3300009334: Microbial communities of water from the North Atlantic ocean - ACM46

Overview

Basic Information

• IMG/M Taxon OID: 3300009334
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126430 | Ga0103841
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM46
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33824844
• Sequencing Scaffolds: 33
• Novel Protein Genes: 45
• Associated Families: 37

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Tamkungvirus → Tamkungvirus ST4	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F000073	Metagenome / Metatranscriptome	2639	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000276	Metatranscriptome	1390	Y
F000697	Metatranscriptome	930	Y
F000797	Metatranscriptome	886	Y
F001583	Metagenome / Metatranscriptome	668	Y
F001926	Metagenome / Metatranscriptome	616	Y
F003081	Metagenome / Metatranscriptome	508	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103841_1000029	Not Available	3063
Ga0103841_1000352	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Aphidomorpha → Aphidoidea → Aphididae → Aphidinae → Aphidini	1387
Ga0103841_1000745	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1096
Ga0103841_1000781	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1082
Ga0103841_1001017	Not Available	996
Ga0103841_1001050	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	987
Ga0103841_1001393	All Organisms → cellular organisms → Eukaryota → Sar	907
Ga0103841_1001519	All Organisms → Viruses	884
Ga0103841_1001811	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	830
Ga0103841_1002244	All Organisms → cellular organisms → Bacteria → Proteobacteria	774

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103841_1000029	Ga0103841_10000297	F093203	MLVFLLKNIHLTGGTILFIGLSKQDYVEYSSFNNILKTFVIKKGHIYADSKFNGFFYNRWSLYKRSSNPSQFFLNLQKNNKFPLLLLSFSKETDSTIFREFSKFGTPIVYMIEGYTHFEFKDYPIMGSYSSQMLNFYLHVLQYSLK*
Ga0103841_1000346	Ga0103841_10003462	F000237	MILHYFTP*YYLYLIQLHVLFCHES*DTDSGETTYEDKSGSYVS*FYDCFLKEIQDA*Y*VLYVFVYFFLHHFNGSTVNFFFFER*NIAELDEIRFYGVAPHWYFRPLMGILILAPTHYEGLM*FAVFFGLLAGLPIFYNFYNTFSDYVSTIPMQNSLLQTSAFIVFMMSMYCAASMLPCGRYYYDPEGGYVGNP*VKFSYQYMFVYLG*ILHHLDLFDHYIFQFSQTFNNRTSSITLRAVRDRRFFVNRNAVLGTVLANQR
Ga0103841_1000352	Ga0103841_10003521	F006424	MVCTSWIDSVFVGDDFPEFSTNLVTALTSLNVNKFSHLFK
Ga0103841_1000745	Ga0103841_10007451	F003081	PEPGLVIELREEMFNDTRFGAEVYYMHVRGVDTLMILSYLHILKKIFFKKLCYI*
Ga0103841_1000781	Ga0103841_10007812	F001926	VRHEDIPDINNPKIMKATLEGDKLMKEVLNGGYNVHPVPPPNSEIKERITRRYERKRIKIEKLFTLGYTTSGDP*
Ga0103841_1001017	Ga0103841_10010171	F105233	DRTLDGLAKDTYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDIAV*
Ga0103841_1001017	Ga0103841_10010172	F004956	MKMISPDGKVSIEAHPSKVESLLNMGWKEEAVHSQDKIKSSSKKKSKDEVKYGDS*
Ga0103841_1001050	Ga0103841_10010501	F004094	VGREELGHTKGTDAVIAEDLSHLLVGVEELLVFRILKVVLLDVSPQLLDAFGAAGFLLANNVGELSAELHGLGESGSLGHFE*
Ga0103841_1001091	Ga0103841_10010911	F000237	LSDLTLTIIANIV*SLFNFIYKTYYVIFTNKHLNTDQLTRVMMFHYFTP*YYLYLVKLHVLFCHESWDSDSGENVYEDKSGSYVS*FYDAFLKEIQDA*Y*TLYVFVYFFIHHFDASTVNYHFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FILLASLPIIYNLYNSNNSYLPVIPMQSSMLQTLFFILFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFSYQYAYLYMA*ILHHLDLVEHYGFQYVQHLMRRHSSLKLYAQARQLPR*SSNSYLPRFSKAKVHHLRFSDAYVDVSVLNTSVKN
Ga0103841_1001393	Ga0103841_10013931	F000797	FGCDAYKIFSDKKVDIGGMTTSPVLISPDFTKYNRKDKPDRYLNTPLFMDVWKQIKADNTYSLYSWTIKADPATVFMPAALKKRLSVYPESETGVYLETCNKVLQGFFGNLEVVSKAGMKRFLEQFESYYVNGGKCWRWDTEACKKEWKWGPWGEDLFMQKTMDDAEVLKKEDFTLTDTGTCPGMRPKADKKNTSYVPSCTDQGVYKFVAVHPMRTLAAWQDCYSAITR*
Ga0103841_1001519	Ga0103841_10015191	F093788	FFIHPLNLSITTMTEFNPRSYILTQLAYAEEQLMIADDMTSKLTWGNRCDALEAALADLEAA*
Ga0103841_1001617	Ga0103841_10016171	F039594	MCDLEIPTRAAHPGDNAYFVSVNGKNATYSIAFWRGRENCHVFTGSGRNEGLDFCAGLVPYGTWRWDSYRNLDNEAECFFEELYQHFRVQPCYTGVTPECNATLQAFACYESFKRCDEQGFYTGTCRDECAGVTYECANNFETVDLEHYNCSSARYVDGHSETCTGGRAFNTLDANRQFFGNEPDLLLFERSPDQIYRRNAASQLHGAFLAVFALLFVIFVLF*
Ga0103841_1001811	Ga0103841_10018111	F000697	GKTSSADWVVKVDADAVFIPSRLRIKLGAQLVPQSGIYLENCKYVEYGYFGNLEVFSQAAWSTLVDKIDDCKADSQINWKVGVHQGKYGPMGEDLFAQACLDKFDVRRVEAFDITTDGACPADRPIDEQKNKKWKPTCAWTATSAMHPFKKVKDWAACHDATMDAFGLTLS*
Ga0103841_1002244	Ga0103841_10022443	F057919	LSVSFHDIHSLFGFFTFLTVASQLVSGTMLAFSLVPEPMIVPIVRNEEDIEDLYTDDFF*
Ga0103841_1002563	Ga0103841_10025631	F000073	RQQSKVAKDGISDEEKKAFALTGGKVSTPTESLKLGKNFVAWMEEHANLRTLCDEGKGKLQWERDIPQDALDNLQNLANSDFKKNLGKIIHDIYLTGHNLFKDMPQGDHKKRAKYRFASKTLMRILPDNLKTEVETLINQKSMTLDLYEILGQCTWGQGKSL*
Ga0103841_1002612	Ga0103841_10026122	F033052	KFITERPVINFLKINSMEIINEIANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK*
Ga0103841_1002720	Ga0103841_10027202	F059045	NILCNLGDEVPKDDVQKLFAELCDPEDEDGMFPYMSFIDRLTGKA*
Ga0103841_1002836	Ga0103841_10028361	F021044	SCSKYDAKIESARVAKYDYDVAASGAKSCAGKVAAPDLTQYVWDYKNDENKDLGLEVGAVVHNREWSYGLVKYASLVQIAVSFKARCTFSFRDEGATRTLRIIDDTGYVHGELDINIHAGTPCVCAVPRKEKIAVKDKVIRCPQKLSDRKAGTCGEKLPTPVPSSTSIAEVQDGARVVVEKKYRADANAMMQQGVEEVRKRVAAKYGAN*
Ga0103841_1002935	Ga0103841_10029351	F019659	VLLLQFKILLPEQVDTIDHGLDELDLRVAKTMLVGNVVGVASLTARLAAGTTGLEVEGFAPGLQAIDGVLGPAGQVNVDGGTHASAQVGGAGVDVAELFGVLEILARFSLDGVTDSGNTPGEPFDDSL
Ga0103841_1003009	Ga0103841_10030091	F104420	MSDNAFEFSQVCGGDLTCDLDLESVMEILETAKSTTLVEIESHTECPDLGLAFCLLHNILGGRFGPVCDNLSEFGLVIDNCETRFAGMNAEDFNTMYDANNMDCFCGREEVQMELSRGRTDVIMFDLVVASSHVALPSRRALRKRKRKRYSWLDWVEVAAFTAYGVTAIGGFAAIAIMGRRNMEAAAMMHFDWVNIVDVCSQYNAFDMCEMPAEVNVKLFEFL
Ga0103841_1003108	Ga0103841_10031081	F021044	SEYDAKIESGRVAKYEYDTAAAGAKACKGPDAADLTQYVWDYKNDENKDLGLEVGAVVHNREWSYGLVKYASLVQIAVSFKARCTFSFRDEGATRTLRIVDDTGYVHGELDINIHAGTPCVCAVPRKEKIAVKDKVIRCPQKLSSRKPGFCGEKLPTPSSSTSIEEVRANTSIRVREADQAAANRELQRLVEEAKRAVGAKYGA*
Ga0103841_1003116	Ga0103841_10031163	F090442	MKEPNVAMLFQGLYASGKSGIRLGIPAKPKKCIGKKQTLTPIKVVQK*
Ga0103841_1003180	Ga0103841_10031801	F057413	TVHFFNGNTDMRQMGSAYLYSFDIAVLLFGVCFNLAGLPYSAGFLGKEFLLFQVLRDDFVSLFVRGC*
Ga0103841_1003209	Ga0103841_10032091	F039463	ASYSNYDDYNYGVTAGPMTDGPVVGLGSRPGPGQNDQNDGTCTRDDYNNQNKHSWRTNCPSGCGITEYVGELDDEINASWSKLVTSLGQVKNRWGKTDDQIHITLDELIKKLQEIMRKIKKERDQFLAIKQTYNQANISGILAQQRVQWAALESRRAELQIELSNKQKKFREEANLCKVNFREYDEQVCDITSYVQKY*
Ga0103841_1003315	Ga0103841_10033151	F102480	SLTSGAGLSGGVGLNQFYDPAVVEALGHEFIIRLVRGYWMSMTRFRHKATNVEFLFFNSHWKHGYGSEQKKIIANAIHAERQKYSSPPPTIFVGDTNQFCMAAELEAIKYLKGEEGDSPVTFTDAIGHDKGSSYDGGCRIDFILASKGQWLRVDSFIDRDGMGAHGSASDHAALMAELVPVAGNVSLQA*
Ga0103841_1004061	Ga0103841_10040611	F021044	QYVWDYKNDENKDLGLEVGAVVHNREWSYGLVKYASLVQIAVSFKARCTFSFRDEGATRTLRIIDDTGYVHGELDINIHAGTPCVCAVPRKEKIAVKDKVIRCPQKLSSRKPGTCGEKIPTPSTSTTQESIAEVGDQARVVVEKKYRAEADAMMKEGVEQVRASVKAKYGIKD*
Ga0103841_1004366	Ga0103841_10043661	F031118	VVTQSRCEALAEILAEAEKLKMYRLDGSTYCEKCHNLLVRIQSVLEDVKVEDLSADDIEKIKAIKEKVIGEEVFAESSSILRNPKEWLGTLNE*
Ga0103841_1004371	Ga0103841_10043713	F090442	KAVEAIVIKLPNEATVFQAVYESGKSGTRRGIPAKPKKCIGKKHKLTPINVVQKWILPNTSG*
Ga0103841_1004556	Ga0103841_10045561	F004174	VVALKRTYDISLSMTVASGKLNLAFSGITLLTFMTIHLFQFRFGVTQPYAICPPPYLVNLHLQDILSPKHPINLFWEPDCKFEDTTYVRDIYRLEFEIFKSFGWCFFYVASVCIFSTHMCLGWQKVVPAPSLGLPQRYHSKAIHMGYVMTIAIALVYISFPVYTHTWPMKPGNFLLEPPRA*
Ga0103841_1004579	Ga0103841_10045791	F000237	YLYLFKLHVLFCHES*DSDSGENVYEDKSGSYVS*FYDAFLKEIQDA*Y*TLYVFVYFFIHHFDASTVNYHFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FILLAALPIIYNLYNSNNSYLPIIPMQSSMLQTLFFILFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFSYQYAYLYMA*IL
Ga0103841_1004647	Ga0103841_10046471	F005505	AMLKEFQDG*Y*VMYIFIYFALHHFNGATVNYFFFER*NIAEMDEIRYYGVAPH*YFRPLMGMLIVCPTHYEGVF*LLFYLVLIAALPVIYNIYNSYGKYVSAIPMQNSLLQTTTFILFMMSLYCSASILPCGRYYYEPEGGYVGNP*IKFSYQYIYLYLA*ILHHLDVLDHHIYQFSSTFTRRTNSYNLRVST*RSATSNK
Ga0103841_1005265	Ga0103841_10052652	F003081	MPEPGLVIELREEMFNDTRFGAEVFYMHIRGVDTIFVLSYLHILKKIYLKNYVTAESDG*
Ga0103841_1005270	Ga0103841_10052701	F005629	MKKQLNKTSFYIRRTWTDFVGNTVKVDHIGPYMENQEFAVGLQRQHDMRRQVPATEQITKWEWVDGVTAIADLVFD*
Ga0103841_1005459	Ga0103841_10054591	F000075	AILAIAAANRYDSMNEDDLLVNLESTLSSALSSEARGDSDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103841_1005629	Ga0103841_10056291	F031121	MPMQRVVEMLGGTNLVLKRWRKNTNQQQFWFDEKSKTIRNNYWKNYCLDIQGNGSSNNLRTVASINSRWW*
Ga0103841_1005876	Ga0103841_10058761	F000276	GDNAYKCAVFFENLTPNRELTWVGALPDALKKATNQAEVRDILGADVTEESFSDLPTCDDKTANARCFAILDRQKSISLDSCDRNLINTRGSETVGDYLCGQVRRWLRRSDDFKANGIEGLRLPFYYSACNGEWTPISDGSEALYFDEDLCCNPQGKFYRCDGIQFNDSC*
Ga0103841_1006127	Ga0103841_10061271	F003081	MPEPGLVVELREEMFNDTRFGAEVFYMHVRGVDSLMLLSYLHIFKKVYLKKLCY*
Ga0103841_1006144	Ga0103841_10061441	F000075	AVLAIAAAVDFESMNEDELLAQLSTTLNSAQRSEARGDSDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103841_1006226	Ga0103841_10062261	F000048	GRYEKVKVVADDWCKKVDTLVKEWKLLDNTVNELNSWVAKDRGAEGEQQYSLEKMESTPGELKNIFKEKEKLVENL*
Ga0103841_1006655	Ga0103841_10066551	F011139	MGLFLGLIAGLPFVYNIYNPMNRYAATIPMQNSILQTSMFILFMMSLYCANSMLPCGRYYYEPEGGY
Ga0103841_1007235	Ga0103841_10072351	F032526	KGPDAADLTQYVWDYKNDENKDLGLEVGAVVHNREWSYGLIKYASLVQVAVSFKAKCTFSFRDEGATRTLKIVDDTGYTHGELDINIHAGTPCVCAVPRKEKIAVKDKVIRCPQKLSSRKAGNCA*
Ga0103841_1007241	Ga0103841_10072411	F001583	TNKHLNTDQLTRLTILHYFTP*YYLYLVKLHVLFCHES*DTDSGENTYEDKSGSYVS*FYDAFLKEIQDA*Y*TLYVFVYFFLHHFNGATVNYFFFER*NISELDEVRFYGVAPH*YFRPLMGILVISPTHYEGLM*MGLFFILLAFLPIFYNFYNVYHKYVSTIPMQNSL
Ga0103841_1007502	Ga0103841_10075021	F096542	MSKYDAEIAKCTEYYSVQCAGMEACRGQIAASNFIAANSRTLILDAQARINRCEVDIPTRKLELKNHNAKCARELKKMKDRLAIILGDIEVMVIILKMTDCDANKRFMQTELLRCLDPCTQKSFITFKSDDLKKQISQLQSSTSNKLVQDTFSDLFEGVESLEESMEFL
Ga0103841_1007516	Ga0103841_10075161	F040511	KCCTTQPTSTKLNSGAGFPPPGGSETLAPSQSTFWNTFTYKGEVDFNGVYYQGKAKYYVMTGVNEPVREFWYFTDLDGKPVQQGEAGTGPTDQGYPVSIGHTIWHDYEPSSLDSSAFDTSVFDIPEVCKTTTLTCAFP*
Ga0103841_1007580	Ga0103841_10075801	F100438	NLLQAMSLKLVKIMNEMMPKRRIQIRELQKQEIEKKQERGPLIRFHIF*